Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1058 ATGGCAATGTCCTGCAAGGATGGTAAAATAGCACTGGACAACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTACCACGAATGCCCCAAACCTAGTTCCATTCGTCGCCAGCAGCTTATCCGCGAGTGCCCCATTCTCTCCAACATTGAGCCGAAGCAAATTAAAGTTTGGTTCCAGAACAGAAGATGCAGAGAGAAGCAGAGAAAAGAGGCTTTTCGCCTTCAAGGAGTTAATAGGAAGCTGACAGCTATGAACAAGCTCTTGATGGAGGAGAATGATAGGTTACAGAAGCAGGTGTCTCAATTGGTATACGAAAATGGCTACTTTCGTCAACACGCACAAAATACAACAATTGCAAGTAAGGACACGAGCTGTGAATCAGCGGTGACGAGCGGTCAACACAGTTTGACGACACAGCATCCCCCAAGGGATGCAAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTTACGGTTGCACTGGCGTGGCAGCACGAGCCTGTGGGCTAGTGGGTCTTGAACCCACAAGGGTTGTGGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCTAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCTTCAACAACATTGGCACCTGCTCGTGACTTTTGGCTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTTGTGGTCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATGCTTCCCAGTGGGTACTTGATAAGACCTTGTGAGGGGGGTGGTTCTATCATACACATTGTTGATCACATGGATTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCATTGTATGAATCATCAACAGTGATGGCTCAGAAGACAACCATGGCGGCCCTACGCCAGCTTAGACAGATATCTCATGAGGTTTCTCAGTCTAACGTCAATGGGTGGGGCAGACGGCCTGCAGCTTTAAGAGCACTTAGTCAGAGACTGAGCAGGGGTTTCAATGAGGCTCTAAATGGGTTTACTGATGAAGGATGGTCCATGATTGGCAATGATGGTGTAGATGATGTAATGATCCTGGTGAATTCATCTCCTGACAAATTAATGGGTTTAAATCTACCCTTTGCCAATGGATTTCCATCTATTAGCAATGCAGTTTTATGTGCCAAAGCATCAATGCTGTTACAGAATGTGCCTCCGGCCATTCTCCTCAGGTTTCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCATGCCAGGATCTCTTGTTGGAAACTATGGAGGTCAAGTTATACTTCCTCTTGCCCATACCATTGAGCATGAAGAGCTTCTGGAAGTCATTAAATTGGATGGAATTGCTCATGCTGCTGAGGACACAATAATGCCGAGAGAGCTGTTTCTTCTGCAACTCTGTAGTGGGATGGATGGGAATGCTGTTGGCACTTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGTATTATTCCTCTTGATTCTGGGAAGGAAGCCTCTAGCCCAAATCGAACCCTTGACCTTGCATCTTCTCTCGATATTGGCCCTGCTGGAAATAAGGCATCTAATGATGATGCTGGAAATTCTGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTCGAAAGTCATATGCAGGAGCATGTAGCAGCCATGGCACGGCAATATGTTCGCAGCATCATATCATCTGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTCATCTGGGCTCACAGGCTGGGCTTAGGTCACCGCTTGGTACTCCTGAAGCCCAAACACTCGCCCGGTGGATCTGCAACAGTTATAGGTGCTACTTGGGAGTGGAGCTGTTAAAATCTAATAATGAGGGAAATGAATCAATACTCGAGGCCTTGTGGCATCACTCGGATGCTCTACTGTGCTGCACTTTAAAGGCAACGCCGGTGTTAACTTTTGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTACAAGACTTGAGTTTGGAGAAAATATTTGATGATCATGGGAGAAAGATCCTCTGTTCCGAGTTTCCTCAGATTATACAACAGGGCTTTGCTTGCCTTCAAGGTGGTATATGTGTCTCTAGCATGGGGCGGCCAGTCTCACATGAGAGAGTTGTGGCCTGGAAAGTGCTGAATGAAGAGGAGAATGCTCATTGCATCTGCTTTATGTTCGTGAACTGGTCTTTTGTTTGA 2514 0.4678 MAMSCKDGKIALDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAFRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHAQNTTIASKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISYGCTGVAARACGLVGLEPTRVVEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYASTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVMAQKTTMAALRQLRQISHEVSQSNVNGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGVDDVMILVNSSPDKLMGLNLPFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSMPGSLVGNYGGQVILPLAHTIEHEELLEVIKLDGIAHAAEDTIMPRELFLLQLCSGMDGNAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASSLDIGPAGNKASNDDAGNSGCMRSVMTIAFEFAFESHMQEHVAAMARQYVRSIISSVQRVALALSPSHLGSQAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESILEALWHHSDALLCCTLKATPVLTFANQAGLDMLETTLVALQDLSLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICVSSMGRPVSHERVVAWKVLNEEENAHCICFMFVNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1058 837 SUPERFAMILY Homeodomain-like 15 78 IPR009057 -
Lele39g1058 837 Pfam MEKHLA domain 694 836 IPR013978 -
Lele39g1058 837 Coils Coil 85 112 - -
Lele39g1058 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Lele39g1058 837 SUPERFAMILY Bet v1-like 159 367 - -
Lele39g1058 837 Pfam START domain 160 368 IPR002913 GO:0008289
Lele39g1058 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Lele39g1058 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Lele39g1058 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Lele39g1058 837 CDD START_ArGLABRA2_like 154 369 - -
Lele39g1058 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Lele39g1058 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Lele39g1058 837 Gene3D - 11 80 - -
Lele39g1058 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Lele39g1058 837 Gene3D - 195 377 IPR023393 -
Lele39g1058 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Lele39g1058 837 CDD bZIP 68 107 - -
Lele39g1058 837 SMART START_1 159 369 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1058 Lele-ChrLele39 19194500 19201233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1058 1 789 Homeobox Transcription Factor Family AT1G52150 84.975 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele39g1058 START 4.6e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0493 43 4481572 4491294 Lele39g1058 39 19194500 19201233 CCT
Lele44g0462 44 3488295 3496404 Lele39g1058 39 19194500 19201233 CCT
Lele39g1058 39 19194500 19201233 Lele39g1058 39 19194500 19201233 ECH
Lele37g0369 37 3096706 3103461 Lele39g1058 39 19194500 19201233 hybridization
Lele38g0346 38 2802942 2812573 Lele39g1058 39 19194500 19201233 hybridization