Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1057 ATGGAAGTGCCTGAATATTTTGTCGGTGCCTACTTCGGCTCCGGAGGGGACCATTTCTCTCCCGAAAAGCGCCACTCCGACCAGAAGCCCGCCGAGCCTTTTGCCGTTGATGACCTCCTCGACTTCTCCCATGCCGACGCTATCATGTCCGATGCTTTCGTTCATAATGTCGCCGGAAACTCCACTGACTCCTTTACCGGAACTGCTGTTAATAGCTGCAACTCCTCAATTGCCCGTGTCGACAACCGTTTCTCCTCCAGCTTTGGTCCTCGTCCCTTCGGCGATCATCAGTTATCCGGTGAACTCTGTGTGCCGTATGATGACATGGCAGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCACCGCACAAGACGAGCTGAAAACACCCCACCTTCTATCCGGCTCCACCACCGCTTCCGCATTTGGCGCCAAACCTCAGACTTCAGAATCTTCCTCCTCTTCTGAAACCCTCCCGCCTTTCGATCCCGATGCAGCTCGGAGCTCACCGTTTTTCCGTCCGGAAACTCCATTACCAGGCAAAGCTCGGAGCAAGCGTGCACGCGCCGCTACTGGGGATTGGTCCACGCGCTTCCTCCATCTCGTGACACCAGCACCGCACAACCAGACGGCCACGACGGAAGCCAAGCCAGTGCAAGCTAAGGCGGCGACAGTGAAGAAGAGGGAGAGTTCAAATTCCGATTCCTCGGGGAGGAAATGCCTGCACTGTGCTGCCGAGAAGACGCCGCAATGGCGAACGGGACCCATGGGTCCGAAGACGCTGTGCAATGCCTGTGGAGTGCGGTACAAGTCGGGGAGGCTGGTGCCGGAGTATCGACCGGCGGCGAGCCCGACGTTTGTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTCCTGGAGCTGAGGAGGCAGAGGGAGATGCAGAGGCATCAGCAGCAACATCTGATTAGTCAAGCATCCATTTTCGGCGTATGCAACGGTGGAGATGAGTTCTTGATCCATCGCCCAGGTGGCCCCGACTATAGGCACATCATCTAG 1044 0.5651 MEVPEYFVGAYFGSGGDHFSPEKRHSDQKPAEPFAVDDLLDFSHADAIMSDAFVHNVAGNSTDSFTGTAVNSCNSSIARVDNRFSSSFGPRPFGDHQLSGELCVPYDDMAELEWLSNFVEDSFTAQDELKTPHLLSGSTTASAFGAKPQTSESSSSSETLPPFDPDAARSSPFFRPETPLPGKARSKRARAATGDWSTRFLHLVTPAPHNQTATTEAKPVQAKAATVKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQREMQRHQQQHLISQASIFGVCNGGDEFLIHRPGGPDYRHII 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1057 347 MobiDBLite consensus disorder prediction 209 240 - -
Lele39g1057 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Lele39g1057 347 MobiDBLite consensus disorder prediction 139 191 - -
Lele39g1057 347 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Lele39g1057 347 SMART GATA_3 236 286 IPR000679 GO:0006355|GO:0043565
Lele39g1057 347 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Lele39g1057 347 FunFam GATA transcription factor 231 317 - -
Lele39g1057 347 PANTHER GATA TRANSCRIPTION FACTOR 24 314 - -
Lele39g1057 347 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Lele39g1057 347 MobiDBLite consensus disorder prediction 223 237 - -
Lele39g1057 347 Pfam GATA zinc finger 242 275 IPR000679 GO:0006355|GO:0043565
Lele39g1057 347 MobiDBLite consensus disorder prediction 139 161 - -
Lele39g1057 347 PIRSF Txn_fac_GATA_plant 18 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele39g1057 347 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1057 Lele-ChrLele39 19183082 19184352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1057 32 347 C2C2-Gata Transcription Factor Family AT4G32890 44.892 8.37e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele39g1057 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1057 39 19183082 19184352 Lele39g1057 39 19183082 19184352 ECH
Lele37g0370 37 3113964 3115233 Lele39g1057 39 19183082 19184352 hybridization
Lele38g0347 38 2825672 2826950 Lele39g1057 39 19183082 19184352 hybridization