Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1053 ATGACGATTCAAACCTCCACAGAAACTACCAGTTCCGGTCACTCTCCTTCCCCTTCTCCTTCTTCCTCGTCGTCTTCCTCGTCTGAACTATCGAACCCCACTTCCAATTCTCAGGCCCGGAAAACTCAGTCTCAGAGCAAACAAGAACAGAGCACTTGCAGAGCCAAGAGAAGCAGAGACCCTTCTTCTGATAAGCACCCATCTTACCATGGAGTCCGAATGCGAAATTGGGGCAAATGGGTCTCTGAAATTCGGGAGCCTCGCAAGAAATCACGAATCTGGCTCGGCACTTTCGCCACACCAGAAATGGCTGCTCGAGCTCATGACGTCGCCTCTCTGAGCATCAAGGGTCAATCCACTGTCCTTAACTTCCCTCACATAGCCTCTCTGCTTCCCAGACCCGTCACGCTTGCCCCACGTGACATCCAAGCCGCCGCCGCTGAAGCCGCCGCCATGGTGAATTTCGACCCTGCTCAGCAGCTTTCGTCTTCTTCTTCGCCGGAAGAAGCAGAGTCGTCGGAGCTGAGTGAGATAGTGGAATTGCCCAACATTGAAGAGAGCTTCGATTCGGTGGAGGAGTCTTCGTCGTCGACGAGGAGTCACGACTTTGTGTGGGTGGAGTCGATGGATTGTTGGGTATATGATCCTCCATTAATGGGTTTACAGAAAGAAGGCTTCTTTGACCCATTTTACGGAGAAGAAGAAGAAGGCTTTGGGATATCAATTTGGGACTAA 735 0.5156 MTIQTSTETTSSGHSPSPSPSSSSSSSSELSNPTSNSQARKTQSQSKQEQSTCRAKRSRDPSSDKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVASLSIKGQSTVLNFPHIASLLPRPVTLAPRDIQAAAAEAAAMVNFDPAQQLSSSSSPEEAESSELSEIVELPNIEESFDSVEESSSSTRSHDFVWVESMDCWVYDPPLMGLQKEGFFDPFYGEEEEGFGISIWD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1053 244 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Lele39g1053 244 MobiDBLite consensus disorder prediction 1 51 - -
Lele39g1053 244 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Lele39g1053 244 MobiDBLite consensus disorder prediction 1 71 - -
Lele39g1053 244 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Lele39g1053 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 44 191 - -
Lele39g1053 244 MobiDBLite consensus disorder prediction 52 71 - -
Lele39g1053 244 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Lele39g1053 244 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Lele39g1053 244 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Lele39g1053 244 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Lele39g1053 244 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Lele39g1053 244 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1053 Lele-ChrLele39 19152541 19153275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1053 36 217 AP2-EREBP Transcription Factor Family AT5G11590 52.736 6.66e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g1053 AP2 1.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1053 39 19152541 19153275 Lele39g1053 39 19152541 19153275 ECH
Lele37g0375 37 3143433 3144155 Lele39g1053 39 19152541 19153275 hybridization
Lele38g0354 38 2883991 2884701 Lele39g1053 39 19152541 19153275 hybridization