Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1045 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGAAGCGTCAGAGAATTCGTCCATGGAGAAGCACTCTGAGAAAATATCTTCTCCTTCTGCTGCTGCTTCGTCTACTCTTTCTTCTGAGAAAGAAAAAGGCTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGGCTTAGCCTTCCTGGCAGTGATTCTCCTCCTGAGAGGAAATCCGGAACTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAATCATAATAATACCGATACTAATGCTAATAATGGGTTCTGTTCTTCTTCTTCCCCTTTGAAGAACAACAACGTGGCTGGAGCTAAGAGGGGTTTTTCTGACGCCATTGATGGGATTGGACCTTCTGGGAAATGGGGTTTCTCTGTGAGTGACAAAATTGTTGGGTCTGAAGCTGATTTGGTAAAAGGAGCCTCTTTGTTCTCTCCCAGAGGAGGAGGGAATGTTGTCAAGCCTCCTCTCGTTGCTGCTGCTGAAGCTTCTGCAAATCCTGAACAACAAAACATTAAAGATAATGGAATTGTTCTAGAGAAGGAGAAACCTCGGGTTTCTGTTGCTGCTACAAATGAACATGGAAGTTCTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCATTTCGAAAGACCAGCATGGCCTCAAATTCGGCGAAGAACAATGATGAAAGCGAGGCGAAAGTTGGATATGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTAATCTCAAAACCTTCACCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGGGAAAGGCGGCCTAAGCGAGAGCTCTTTGAGGGACCTTCTTCATGGTTCTGAATATGTTCTTACTTATGAAGATAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCGCTGACTCATGTAGGAGATTAAGGATCATGAAAGGTTCCGAGGCGAACGGGCTCGCTCCAAGGGTGGTAGAAAAATCCAGGAGCCAAAACTAG 1095 0.4502 MSKPLEHDYIGLEASENSSMEKHSEKISSPSAAASSTLSSEKEKGSSLNFKETELRLSLPGSDSPPERKSGTGISLFGKDLQSNHNNTDTNANNGFCSSSSPLKNNNVAGAKRGFSDAIDGIGPSGKWGFSVSDKIVGSEADLVKGASLFSPRGGGNVVKPPLVAAAEASANPEQQNIKDNGIVLEKEKPRVSVAATNEHGSSPPAAKAQVVGWPPIRSFRKTSMASNSAKNNDESEAKVGYGCLYVKVSMDGAPYLRKVNLKTFTNYVELSSALEKMFSCFTIGQCSSGGLAGKGGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFADSCRRLRIMKGSEANGLAPRVVEKSRSQN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1045 364 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 351 IPR003311 GO:0005634|GO:0006355
Lele39g1045 364 MobiDBLite consensus disorder prediction 24 44 - -
Lele39g1045 364 SUPERFAMILY CAD & PB1 domains 243 345 - -
Lele39g1045 364 MobiDBLite consensus disorder prediction 76 101 - -
Lele39g1045 364 FunFam Auxin-responsive protein 239 356 - -
Lele39g1045 364 Gene3D - 239 358 - -
Lele39g1045 364 MobiDBLite consensus disorder prediction 1 101 - -
Lele39g1045 364 ProSiteProfiles PB1 domain profile. 244 346 IPR000270 GO:0005515
Lele39g1045 364 Pfam AUX/IAA family 52 355 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1045 Lele-ChrLele39 19099018 19101398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1045 248 354 B3 DNA Binding Superfamily AT4G23980 29.907 4.77e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele39g1045 AUX_IAA 3e-86 CL0072