Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1032 ATGGGCGTGGACATGTCCAATAACCCACCTCCATCTTCTCACACTAAGGACTTCTTCGCTTCTCCGGCTCTTTCTCTCAGCCTCGCTGGGATTTTCCGTCATGCCGGGGAAGCAGCTGTAGCGGCGGGGCCCGCCACGTCTAGCAGGGAGGTTGAGGAAGGGGATGAAGGGAGCGGCGGCGGTGGCCGGCGAGACGAAACAGTGGAGATTAGCAGCGAGAACTCAGGCCACACGAGATCCAGATCGGAGGATATTGATTTTGAAGGAGAAGGAGAGCATGACGATGACGGTGGCGACGGTGACGGAGATAAGAACAAGAAGAAGAAAAGGAAGAAGTATCACAGGCACACAGCTGAACAAATCAGAGAAATGGAAGCGCTTTTCAAAGAATCGCCACATCCTGATGAAAAGCAAAGGCAACAGCTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAGAATCGTCGAACCCAAATCAAGGCAATTCAAGAGCGTCATGAGAATTCGTTGTTGAAGATGGAAATCGAGAAACTGAGAGACGAAAACAAGCAGATGAGAGACACCATCAACAAAGCTTGCTGCCCCAACTGTGGCATCGCCGCCACCAGCAGAGACACCGTCTTGTCCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTCAAAGCCGAGGTAGAGAAATTCTTAGATGTGAATCAATGGAGGGAGATGTTTCCATGCTTGATATCAAAGGCAGCAAATGTAGATGTGATTTGCAGTGGAGAAGGAGCTAACAGGAATGGTGCGGTTCATCTGATGTTTGCTGAGCTGCAAATGCTAACGCCAATGGTGGCCACAAGAGAAGTGTATTTCGTGAGGTACTGTAAGCAACTCAGTGCAGAGCAGTGGGCCATCGTGGACGTGTCAGTGGACAAGGTTGAAGACAACATCGATGCCTCTCTTGTGAAATGTCGAAAACGCCCCTCTGGCTGCATTATTGAAGATAAGTCTAATGGCCATTGCAAGGTGACGTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTGCACACAATGTACCGCACCATTGTAAACAGTGGCATGGCTTTTGGTGCAAGGCACTGGGTTGCCACCCTCCAACTTCAATGTGAACGTCTCGTTTTCTTCATGGCCACCAATGTTCCCATGAAGGATTCAACTGGTGTTGCAACGGATGAAGCTCGCAGATCTGAGTGGGATATCATGTCCAATGGTGCTTCAGTGCAATCCATAGCAAACTTAGCCAAAGGACAAGATCGAGGCAATTCAGTGACCATCCAAACAATTAAATCAAAGGAGAACAGCATGCAAAAAATAAAATCTTTTGGAGTGTCGTTAATGTGCTACTTAAATCCATTACTAAAGAAGTTCAGAAGCGTCATGATTCAAAATATTGCATATTTAACAAGCTCAAATAAATGA 1458 0.476 MGVDMSNNPPPSSHTKDFFASPALSLSLAGIFRHAGEAAVAAGPATSSREVEEGDEGSGGGGRRDETVEISSENSGHTRSRSEDIDFEGEGEHDDDGGDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKMEIEKLRDENKQMRDTINKACCPNCGIAATSRDTVLSTEEQQLRIENAKLKAEVEKFLDVNQWREMFPCLISKAANVDVICSGEGANRNGAVHLMFAELQMLTPMVATREVYFVRYCKQLSAEQWAIVDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTMYRTIVNSGMAFGARHWVATLQLQCERLVFFMATNVPMKDSTGVATDEARRSEWDIMSNGASVQSIANLAKGQDRGNSVTIQTIKSKENSMQKIKSFGVSLMCYLNPLLKKFRSVMIQNIAYLTSSNK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1032 485 Coils Coil 166 193 - -
Lele39g1032 485 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Lele39g1032 485 Gene3D - 253 381 IPR023393 -
Lele39g1032 485 SMART START_1 184 384 IPR002913 GO:0008289
Lele39g1032 485 SUPERFAMILY Homeodomain-like 100 168 IPR009057 -
Lele39g1032 485 PRINTS Lambda-repressor HTH signature 138 147 IPR000047 GO:0003677
Lele39g1032 485 PRINTS Lambda-repressor HTH signature 147 163 IPR000047 GO:0003677
Lele39g1032 485 CDD START_ArGLABRA2_like 185 383 - -
Lele39g1032 485 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 403 448 IPR042160 -
Lele39g1032 485 Gene3D - 98 179 - -
Lele39g1032 485 Pfam Homeodomain 110 165 IPR001356 GO:0003677
Lele39g1032 485 Pfam START domain 229 384 IPR002913 GO:0008289
Lele39g1032 485 ProSiteProfiles START domain profile. 231 387 IPR002913 GO:0008289
Lele39g1032 485 SUPERFAMILY Bet v1-like 232 384 - -
Lele39g1032 485 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Lele39g1032 485 MobiDBLite consensus disorder prediction 37 119 - -
Lele39g1032 485 MobiDBLite consensus disorder prediction 49 87 - -
Lele39g1032 485 CDD homeodomain 114 165 IPR001356 GO:0003677
Lele39g1032 485 Coils Coil 217 237 - -
Lele39g1032 485 FunFam Homeobox-leucine zipper protein HDG1 96 183 - -
Lele39g1032 485 SMART HOX_1 109 171 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1032 Lele-ChrLele39 18970702 18980925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1032 404 448 Homeobox Transcription Factor Family AT1G79840 77.778 3.31e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele39g1032 START 1.2e-45 CL0209