LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g1024	ATGTCTTCTTCCTCTCCCATTTCACCTCGAGACCCCCCTCTATACCCCCGCCTCCTCTCCTACAGAGTAATTGATTACTACTCTACAGAGTTGCCGCCGTCTCCCTCGCCGTCTCCCTTGCCGTCTGGTGGTCAGGAAAGCCCAGGCAATCTATTCCTGGGGGCTTTGCTTAGTTCATTGATGACGTTGACGCTGATAAGTTTGGTAGTTGGTGTCATATATATATGGAGAAAGAGGAGGCACTCCCCACAATCGCCAAACCAGCCAGAGGGTACACTTGCACTTCTACCATCTTACAATATTGCCTCAGGACTCTCACCAAACAACATATTTACATATGAAGAATTAGAATTGGCAACAGAAGGATTCTCAGAGTCAAATTTTCTGGGACAAGGTGGATTTGGTACTGTTCATAAAGGAATCCTCCCAAATAAACAAGCTGTGGCCATCAAGCAGCAGAAATCTGGAAGCAAACAGGGGATGCAAGAGTTTCAGACTGAAGTACAGGTCATTAGTAGAGTCCATCACAGACATCTTGTTTCCCTTGTTGGATACTGTATTGCTACAGCTCAGATGACGTTGATGCTTGTTTATGAGTTTCTCCCTAACAAAACCTTAGACTTCCATCTCCATGGAAAAGGCACAGAAACTCTAGACTGGTCAACAAGGATGAAGATTGCCATTGGCTCTGCAAAAGGATTGGCATATCTGCACGAAGACTGTGAACCCAAAATCATACATCGTGACATCAAGGCAGCTAACATTCTTCTTCATAATAATTTTGAGCCAAAGATTGCAGATTTTGGACTGGCCAAACTTTCATCGGACACTGATACCCATGTCTCCACGGCTAAAATAAAGGGAACCTTTGGATACTTGGCTCCAGAATATGCAAATAGCGGAAGACTCTCAGAGAAGGCAGATGTCTTCTCCTTTGGTGTTGTCCTCTTGGAGTTGATCACAGGACGAAAACCTGTTCTTCAAACTGGCTCTTTCCAAGATGACAGTCTGGTTCAGTGGGCAAGACCCCTACTCTCCATAGCTTTGGGAAATCGAAATTTTGAGGTTCTTGTTGATGCAAGGTTGCAGAATAATTACAACTCCGAAGAGATGTTTCGAATGGCTTCTTGTGCTGCAAACTGTGTGCGCCATTCAGCCAATCGTCGTCCTCGAATGAGCCAGGTAGGGGATGCTTTGGCAGGAAAGATTTGTCTGGATAATAATTGGAACGAGGAGGGCACACAAGTAGACGACCAAGGCCTGAACAGGTTTTGGAGGGGGGCCATAGGCGAAGGCCATAGCACTGGGGAATACGATGAGCCTATCAGTTCAAGCCAAGGAAATACAACTGATGCCTCTTACTCAGTTTCTGTTTAA	1377	0.4553	MSSSSPISPRDPPLYPRLLSYRVIDYYSTELPPSPSPSPLPSGGQESPGNLFLGALLSSLMTLTLISLVVGVIYIWRKRRHSPQSPNQPEGTLALLPSYNIASGLSPNNIFTYEELELATEGFSESNFLGQGGFGTVHKGILPNKQAVAIKQQKSGSKQGMQEFQTEVQVISRVHHRHLVSLVGYCIATAQMTLMLVYEFLPNKTLDFHLHGKGTETLDWSTRMKIAIGSAKGLAYLHEDCEPKIIHRDIKAANILLHNNFEPKIADFGLAKLSSDTDTHVSTAKIKGTFGYLAPEYANSGRLSEKADVFSFGVVLLELITGRKPVLQTGSFQDDSLVQWARPLLSIALGNRNFEVLVDARLQNNYNSEEMFRMASCAANCVRHSANRRPRMSQVGDALAGKICLDNNWNEEGTQVDDQGLNRFWRGAIGEGHSTGEYDEPISSSQGNTTDASYSVSV	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g1024	458	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	100	200	-	-
	Lele39g1024	458	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	245	257	IPR008271	GO:0004672\|GO:0006468
	Lele39g1024	458	MobiDBLite	consensus disorder prediction	438	458	-	-
	Lele39g1024	458	MobiDBLite	consensus disorder prediction	434	458	-	-
	Lele39g1024	458	SMART	serkin_6	123	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele39g1024	458	SUPERFAMILY	Protein kinase-like (PK-like)	101	397	IPR011009	-
	Lele39g1024	458	Gene3D	Phosphorylase Kinase; domain 1	99	200	-	-
	Lele39g1024	458	Pfam	Protein tyrosine and serine/threonine kinase	127	397	IPR001245	GO:0004672\|GO:0006468
	Lele39g1024	458	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	65	412	-	-
	Lele39g1024	458	ProSiteProfiles	Protein kinase domain profile.	123	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele39g1024	458	FunFam	proline-rich receptor-like protein kinase PERK8	201	416	-	-
	Lele39g1024	458	Gene3D	Transferase(Phosphotransferase) domain 1	201	416	-	-
	Lele39g1024	458	ProSitePatterns	Protein kinases ATP-binding region signature.	129	151	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g1024	Lele-ChrLele39	18926418	18931512	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g1024	111	399	Trihelix Transcription Factor Family	AT1G70460	64.014	3.76e-127	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lele39g1024		PK_Tyr_Ser-Thr	6.2e-48	CL0016