Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1023 ATGATGCATTATACGATTATATTACTGGCATTGATTTTCTTTTCGTTCTTCTCCTTCGACACAGTTGAACTGCACAGAGCTCTTGGATCGGTTGCTGGTGATGTCTCTGTATCTACCAGTTGGGCGGTTTGCAGCGACTGTGATTGGTGCGGTGCCGATCTTGGGGCTGTTGGGTTACTTGTCTTTCTGTGTATGCAGAAAGAGGAGGTTGGTCGTCATTGGCCTCAGCACGATAATAGGCAAGAGACTGGTCCTCCAAAGCCAATAAGAAGTCCAACAATAATACAATCTTCATCAGTAATAACCACCACAAACTCAGCTGAATCGGGGAGGCAACACCAGCTTGTGGTTGCACCATTAGGGTTACTGTCACCAAGCACTTTTACGTATGGAGAATTAGAATTGGCAACAGAGGGATTCTCAGACTCAAAATTTCTGGGCCAAGGAAAGGGCACAGCAACTATGGACTGGACAACAAGGATGAAGATTGCTATTGGTTCTGCTAAAGCATTCGCATATCTGCATGAAGACTGTCAACCAAAAATCATACACCGTGACATCAAGGCAGCTAACATTCTTCTTGATAATGATTTTGAACCAAAGGTTGCAGATTTTGGGCATGCCAGATTCTCATTAGATACTGAAACCCATGTCTCAACTCGAATAGTGGGAACCATTGGATACTTGGCGCCAGAATATGCAGCTAGCGGGAAACTCACAGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTGCTCTTGGAGCTGATTACTGGACGAAGACCTGCTTTTAAAACCGAGTATTTCACAGATGACAGTATCGTTGAATGCATTTGTGTATTTCTCTTTTAG 849 0.4393 MMHYTIILLALIFFSFFSFDTVELHRALGSVAGDVSVSTSWAVCSDCDWCGADLGAVGLLVFLCMQKEEVGRHWPQHDNRQETGPPKPIRSPTIIQSSSVITTTNSAESGRQHQLVVAPLGLLSPSTFTYGELELATEGFSDSKFLGQGKGTATMDWTTRMKIAIGSAKAFAYLHEDCQPKIIHRDIKAANILLDNDFEPKVADFGHARFSLDTETHVSTRIVGTIGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRRPAFKTEYFTDDSIVECICVFLF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1023 282 SMART serkin_6 54 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1023 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Lele39g1023 282 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 150 275 - -
Lele39g1023 282 Gene3D Transferase(Phosphotransferase) domain 1 143 279 - -
Lele39g1023 282 FunFam Os07g0541700 protein 140 225 - -
Lele39g1023 282 SUPERFAMILY Protein kinase-like (PK-like) 147 266 IPR011009 -
Lele39g1023 282 Pfam Protein kinase domain 159 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1023 282 ProSiteProfiles Protein kinase domain profile. 22 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1023 Lele-ChrLele39 18914904 18918764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1023 148 275 Trihelix Transcription Factor Family AT1G70460 66.406 1.67e-54 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele39g1023 Pkinase 2.3e-25 CL0016