Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1022 ATGTCTTCGCCGTCCCCGGAAGCATCTCAGCCTGCCAACTCCACGGCTCCTCCTCCTCCGCCTCTTGTCACCACCAATGACACCTCTCCTCCAGCCCCGACTAATTCCTCGTCACCTACTGCCACTCCGGCCGCACCACCTCCTCCTCCAGCCGTGTTGCCGACGCCGGTGGCAGATTCGAACGGAATGTCCAGGGCTACAGTAATTGGACTAGTTATTGGTACTGTATTTGGCTCGCTGCTTATGCTCGTTTGTGTGGGCGTTTGCGCTTTTTTCTATAAAAGGAGAAAGCGGAGGAGGATGAGAAAATATGGGTTAGACGATTACTCTGCTGCTCCTCCTCCATCCCAACCCAAAGCTGATCAGTTTGGTGGTCCGCCCCAGCAATGGGAACATAGCAATCCTCCTCCAACCGATGGTGGAGCAACACTGCCTCCCAAGACAAGTCCACCCCCCGGAGTTCTGTTGAATCAGCAAGCATCATCCCAGAATGTCGCATCTCCTCCTATGTGTTCTACAAGTGGCACAAGCTTGGAATCTGAGAAACCATACCATGCACCAAATCCTGCCATTGCCTTGGGACTGTCACAAAGCGCATTTACATATGAAGAACTTGCATTTGCAACAAATGGATTCTCTGACTCAAATCTTCTTGGCCAAGGTGGGTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACTGTTGCAATTAAGCAGCTCAAATCTGGGAGCAGACAGGGGGAGCGTGAGTTCCAGGCTGAAGTGGAGGTCATTAGCCGAGTCCATCACAGACATCTTGTTTCCTTAGTTGGATACTGCACTGCTGGAGCACAGAGGTTGCTTGTATATGAATTTGTCCCAAACAATACACTAGAATTCCATTTACATGGAAAAGATAAAACAACAATGGACTGGACAACAAGGATAAAAATTGCTATTGGATCTGCAAAGGGATTGTCATATCTGCATGAGGACTGTCACCCGAGAATAATACATCGTGACATCAAGGCATCTAACATTCTTCTTGATGACAATTTTGAGGCCAAGGTTGCTGATTTTGGACTTGCCAAATTTTCATCAGACGCTGATACCCATGTCTCCACACGAGTAATGGGAACCTTTGGATACCTTGCTCCAGAATACGCTGCTAGTGGGAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACAGGGCGAAGACCTGTTGATAAAACTGAGTCTTTTACAGATGACAGTATGGTTGAGTGGGCAAGACCTTTACTTTCTCAAGCTATGGAAAACGGCAACTTTGACGCTCTTGCTGATCCAAGGTTTCAGAAGAGTTACGACTCTGATGAGATGCTTCGAATGGTCGCCTGTGCTGCAAATTGTGTGCGCCATTCAGCTAGGCATCGGCCTCGAATGAGCCAGGTAGTTCGGGCTCTGGAAGGCAATATTTCATTGGATGATCTGAATGAGGGGAGCACTCCTGGGCACAGCAGAGCTTTTAGTTCCTTTGAAAGTTCAGGTTATGATACTGGCCGATACAATGAGGACCTAAAGAAGTTCAGGAAGCTGGCACTAGAGCAAGAAACTGGTGAATACAGTGGACCCAGTAGCGATTATGGTCAACATCAATCCGCCTCAAGCAGTTCAGGCCTGCAAAATACACGAGAAATACATATAAGAGGAGATTCACCGAGTTTTGGTTAA 1722 0.4762 MSSPSPEASQPANSTAPPPPPLVTTNDTSPPAPTNSSSPTATPAAPPPPPAVLPTPVADSNGMSRATVIGLVIGTVFGSLLMLVCVGVCAFFYKRRKRRRMRKYGLDDYSAAPPPSQPKADQFGGPPQQWEHSNPPPTDGGATLPPKTSPPPGVLLNQQASSQNVASPPMCSTSGTSLESEKPYHAPNPAIALGLSQSAFTYEELAFATNGFSDSNLLGQGGFGYVHKGVLPNGKTVAIKQLKSGSRQGEREFQAEVEVISRVHHRHLVSLVGYCTAGAQRLLVYEFVPNNTLEFHLHGKDKTTMDWTTRIKIAIGSAKGLSYLHEDCHPRIIHRDIKASNILLDDNFEAKVADFGLAKFSSDADTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRRPVDKTESFTDDSMVEWARPLLSQAMENGNFDALADPRFQKSYDSDEMLRMVACAANCVRHSARHRPRMSQVVRALEGNISLDDLNEGSTPGHSRAFSSFESSGYDTGRYNEDLKKFRKLALEQETGEYSGPSSDYGQHQSASSSSGLQNTREIHIRGDSPSFG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1022 573 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 80 533 - -
Lele39g1022 573 MobiDBLite consensus disorder prediction 11 27 - -
Lele39g1022 573 MobiDBLite consensus disorder prediction 536 565 - -
Lele39g1022 573 MobiDBLite consensus disorder prediction 36 55 - -
Lele39g1022 573 SMART serkin_6 212 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1022 573 MobiDBLite consensus disorder prediction 153 181 - -
Lele39g1022 573 MobiDBLite consensus disorder prediction 1 58 - -
Lele39g1022 573 SUPERFAMILY Protein kinase-like (PK-like) 191 485 IPR011009 -
Lele39g1022 573 FunFam proline-rich receptor-like protein kinase PERK1 190 287 - -
Lele39g1022 573 Gene3D Phosphorylase Kinase; domain 1 175 287 - -
Lele39g1022 573 Gene3D Transferase(Phosphotransferase) domain 1 288 497 - -
Lele39g1022 573 ProSiteProfiles Protein kinase domain profile. 212 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g1022 573 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524
Lele39g1022 573 FunFam Proline-rich receptor-like protein kinase PERK1 288 496 - -
Lele39g1022 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Lele39g1022 573 Pfam Protein tyrosine and serine/threonine kinase 216 485 IPR001245 GO:0004672|GO:0006468
Lele39g1022 573 MobiDBLite consensus disorder prediction 106 183 - -
Lele39g1022 573 MobiDBLite consensus disorder prediction 532 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1022 Lele-ChrLele39 18910366 18914607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1022 30 556 Trihelix Transcription Factor Family AT1G70460 49.813 3.54e-164 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele39g1022 PK_Tyr_Ser-Thr 8.6e-49 CL0016