Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1010 ATGACATCGCCGATCTTCTCAAGAGTGGCCTTGACGACAGTGCATATGGCCGAGCAATTTCTAGAAGGTTGGCATCTTAAGCGAATATCGCACTCCTATGAAAATACAATTTTGTCTTTTGAAGAATCAATTCTTTTTCCAGAGATTGCTTATAGTCTTGCATTGATTCATAATCATGCTGAAGGGTTCTTGATGGAGGAAAACACGTCATCTTGTTACCAACTCGTTTTAAAGTTTGTTGGTTGCATATTAGATCATCTTCAAGTCCTTTCTAAGGAAAGTAATTGTCCTGATGAATGCAAGGAGGCTGTACCGTCATTGATACATGCTGCAGCAAGATTTTCTCATCCGCCAGAATTGCGTGACCTCAGAACTCTGTTTAAGGAGTTATTTGGGGATTCTCTTGAACCTTTCATAAGTAGAGAGATATTAAATGATATGGCACAAGAATTCTCTATAAAGTGGAATAGCAAGGCTATGGAGGAGAAACTCAATATTTCCTGTTCATCACTTCAAGAGATGACCAGGCAGACGCCACTAAACTTGAAGTATATCAGTATTGAAGAAACATTGATGCTCCAGAGCATCAGTGATGATGAAGAAAGTACAGACATATCGTCCCAGGATTGCACAAAGACTCAACCTGATGTTAAAGAGCCAGTCGTTCAAGAAAAGCCAAGACCCAAATCAGTCGGAACTAGAGGTCTCAAAACACCACGTGGTCAACAAAAAACTGCTTCTGATATTGATTCAAGGGATGAAGAAGATAGGAAAATGGACAGGCTTTTGACGCATTACAGTATCAAAATATCTAGTCCTGAATCGAAGGGGAAGAAGCAGAACACGATTAGGCACATGAAATCAGATTCGGATGGGCTGCTTACAAGAGGAACATCTCTTCCTGCTCATCATCTCTTAGCTTCTGTAGAACCAGAAATGCAAAGTGAAGGAGCAAAGCATGTTCATCCTAAGCTACCAGATTATGAGGAATTTGCAGCTCGTCTTGCATCTATCAGAGGGAGATGA 1026 0.4064 MTSPIFSRVALTTVHMAEQFLEGWHLKRISHSYENTILSFEESILFPEIAYSLALIHNHAEGFLMEENTSSCYQLVLKFVGCILDHLQVLSKESNCPDECKEAVPSLIHAAARFSHPPELRDLRTLFKELFGDSLEPFISREILNDMAQEFSIKWNSKAMEEKLNISCSSLQEMTRQTPLNLKYISIEETLMLQSISDDEESTDISSQDCTKTQPDVKEPVVQEKPRPKSVGTRGLKTPRGQQKTASDIDSRDEEDRKMDRLLTHYSIKISSPESKGKKQNTIRHMKSDSDGLLTRGTSLPAHHLLASVEPEMQSEGAKHVHPKLPDYEEFAARLASIRGR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1010 341 Pfam Regulator of Vps4 activity in the MVB pathway 59 160 IPR005061 GO:0015031
Lele39g1010 341 PANTHER IST1 FAMILY MEMBER 60 339 IPR005061 GO:0015031
Lele39g1010 341 MobiDBLite consensus disorder prediction 196 214 - -
Lele39g1010 341 MobiDBLite consensus disorder prediction 196 257 - -
Lele39g1010 341 Gene3D - 51 165 IPR042277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1010 Lele-ChrLele39 18825800 18828049 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1010 39 18825800 18828049 Lele39g1010 39 18825800 18828049 ECH
Lele37g0420 37 3476957 3478483 Lele39g1010 39 18825800 18828049 hybridization
Lele38g0390 38 3161270 3163565 Lele39g1010 39 18825800 18828049 hybridization