Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1000 ATGTCGAAGAAGCTTCTGAAATTCTTTAACTATTGCCTCTCCAAGCTCAAAAACTCTCGTCCCCAGATCCACCCTTCTTCTCCTTCTGCTTCTTCATCTCCGATAATGCGGATCCTCTCGGGTTGTAAGCAACCCAAAACCCCTTCGTTTGCCGCCACCAGAGGAAACGACGACGACGCAGCTACGCTGGCAGATGTCGATCGCTTCCTCTTTGAGAATTTCAAATCTCTATTCCTGTACGACGATGAATATACCACTGAGAACGATAGCAACAACGTCACCGATGATGGAGCTTCTGAGGAAAATCACGGGGATCGGAAATATGGATCCGATCCGCTCGGCCCGACGTCGTCGGATCTTCTTGGTGACCTGAGGGAGTCTTCGGGTTCTCGGGAGAGCATCGTCTTATTGGCTTGGTCGGAGAACCCATGTGAGGATTTCCGGCGATCTATGAAGGCAATGGTGGACGCGAGATTGAGGAATCACGGGAGGGTTGATTGGGGATTTATGGAGGAGCTCTTGCTTTGGTACTTGAACCTGAACGAGAAGAAGTCGCACAAGTTTATACTGAGCGCTTACGTAGATTTAATCAACGGTTTTCGTGAAAGCTCGTCGGAGAGAGCTCCAGCGACGGCGAAGCCAAGGAGTGTTCGAACATTTAGGACAGGAAGGGAGATCGGGAGGAACAAAGATGCAATCCCTGGATTAGAGAAACTGGACTGA 723 0.4993 MSKKLLKFFNYCLSKLKNSRPQIHPSSPSASSSPIMRILSGCKQPKTPSFAATRGNDDDAATLADVDRFLFENFKSLFLYDDEYTTENDSNNVTDDGASEENHGDRKYGSDPLGPTSSDLLGDLRESSGSRESIVLLAWSENPCEDFRRSMKAMVDARLRNHGRVDWGFMEELLLWYLNLNEKKSHKFILSAYVDLINGFRESSSERAPATAKPRSVRTFRTGREIGRNKDAIPGLEKLD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1000 240 Pfam Transcriptional repressor, ovate 140 198 IPR006458 -
Lele39g1000 240 MobiDBLite consensus disorder prediction 205 240 - -
Lele39g1000 240 MobiDBLite consensus disorder prediction 88 118 - -
Lele39g1000 240 MobiDBLite consensus disorder prediction 218 240 - -
Lele39g1000 240 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 68 200 IPR038933 GO:0045892
Lele39g1000 240 ProSiteProfiles OVATE domain profile. 136 199 IPR006458 -
Lele39g1000 240 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 138 198 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1000 Lele-ChrLele39 18780309 18781031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lele39g1000 Ovate 9.6e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1000 39 18780309 18781031 Lele39g1000 39 18780309 18781031 ECH
Lele37g0431 37 3528828 3529547 Lele39g1000 39 18780309 18781031 hybridization
Lele38g0399 38 3219666 3221036 Lele39g1000 39 18780309 18781031 hybridization