Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0996 ATGGATGACACTGAGGATGATGCAAAGTATGCTCCTAACCCATATGATGTAAGTCATCGACAAGGTTATGGTTATTTGAATAGTCAGAAAATTCCAGTTGGAAGTTCTCAACATTCTCAGCCAGTTAGAAGTGAGTATGCTGGAGATGATAATGATTATGAGGAAGAAGACAATGGAGAACAGGAAGAGGAAGAAGAAGATGATGATAATGATAATGATGATGACCTTGATGTTGATCAAGGTAACACTATTCAAGTTCCCCAGAAGGATGGTGATGAAAATGGTGATGACGAAGAAGATGGTGAGAATGGTGGTGGGGATGATAGTGATGTTGACTCTGCTGCTGATGCTGATGATGATGATAAGCAGAAAAGTTATACCATAAGGATCGAAGATGATTTAGAATCTCACCCAAAAAAGAGAAAGCTAAAGAGTTTGATTTCAACTTATGAATTTGCGCCCCGTGTACCTGCACCACCAGTTGCAGCTCCTTCAGCTCCCAAACCATCATTTGGTGGCAGAAATTCCTTTACTGACTGGACTGAGCGCGAAACATTTGTTCTTCTCGATGCTTGGGGGGATCGGTTTATTCAACATGGAAAAAAGAGTCTCCGGTCTGAGGAATGGCAAGAAGTTGCAGAAAGGGTAAAAGAAGTTTCAAAAGTTGAAAGGACAGATACTCAGTGTAGAAATAGACTTGACACATTAAAGAAAAAGTACAAAAAGGAGAAGTCCAAATTAGCAGAAATGGGTGGTGGAACTAGCAAATGGGTTTATTTTAATAGGATCGATAAGCTGTTGTACTCTCCTAAACAAGAAGCTGGTTTATCTTGTGGTTTGGACTCGGGAGAGTATGTTTTCTCGAACCCACGAGTTTATTTGAACCGTGCGAATGTGTTTGATGAAATGAGGGATAGTGCAGGGAATTCAGAGTCTACTGGCGACGAAGATTCGGTTGGACTCCAACCAAAGAAAAAAAGTTCTAGCAGGAACAACGACAAGACTTCTTCCTTCAAATTACTAGCTGATTCCATTCAGAAATTCAGCGAGATATACGAGAAGATTGAAAATAACAAAAGACAACAGATGATGGAACTAGAAAAGATGAGGATGGAATTCCAAAAGGAATTGGAAATGCAGAAGAGGCAAATTTTTGAGAAAGTGCAGAACGAGATCGCCAAACTGCATCAGAGAGATGAGGAAGAGAACGACGAATCTGCTGAGAACGGTTTGAAGGACGTTAATTCAGTCAAGTAG 1257 0.4041 MDDTEDDAKYAPNPYDVSHRQGYGYLNSQKIPVGSSQHSQPVRSEYAGDDNDYEEEDNGEQEEEEEDDDNDNDDDLDVDQGNTIQVPQKDGDENGDDEEDGENGGGDDSDVDSAADADDDDKQKSYTIRIEDDLESHPKKRKLKSLISTYEFAPRVPAPPVAAPSAPKPSFGGRNSFTDWTERETFVLLDAWGDRFIQHGKKSLRSEEWQEVAERVKEVSKVERTDTQCRNRLDTLKKKYKKEKSKLAEMGGGTSKWVYFNRIDKLLYSPKQEAGLSCGLDSGEYVFSNPRVYLNRANVFDEMRDSAGNSESTGDEDSVGLQPKKKSSSRNNDKTSSFKLLADSIQKFSEIYEKIENNKRQQMMELEKMRMEFQKELEMQKRQIFEKVQNEIAKLHQRDEEENDESAENGLKDVNSVK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0996 418 MobiDBLite consensus disorder prediction 49 78 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 318 332 - -
Lele39g0996 418 Coils Coil 385 405 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 92 116 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 305 335 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 22 44 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 395 418 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 1 140 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 395 411 - -
Lele39g0996 418 Coils Coil 352 383 - -
Lele39g0996 418 Gene3D - 180 242 - -
Lele39g0996 418 ProSiteProfiles Myb-like domain profile. 180 237 IPR001005 -
Lele39g0996 418 Pfam Myb/SANT-like DNA-binding domain 179 266 IPR044822 -
Lele39g0996 418 MobiDBLite consensus disorder prediction 117 140 - -
Lele39g0996 418 MobiDBLite consensus disorder prediction 156 176 - -
Lele39g0996 418 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 165 402 IPR044823 -
Lele39g0996 418 FunFam trihelix transcription factor ASIL2 180 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0996 Lele-ChrLele39 18755776 18758790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0996 180 408 Trihelix Transcription Factor Family AT1G54060 34.532 2.00e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele39g0996 Myb_DNA-bind_4 6.8e-21 CL0123