Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0980 ATGAGTGGCAATTCGTTGGGGGGCTTACAGGATCACCTCAAATTGGCGAGGGAATACGCTCTTGAAGGCCTCTATGACACCTCCATCATCTTCTTCGACGGGGCAATTGCCCAGATCAACAAACACTTGAACACTGTGGATGACCCTTTAATGCGTACAAAATGGATGAATGTAAAGAAAGCTCTTTCTGAAGAAACAGAAGTAGTGAAGCAACTGGAGGCAGAGAGAAAAGCATTCAAAGAAACACCTAGTGGTAGTGGCAGACGTCCTTCTTCGCCCCCCATATCAGCTAAATCATCATCATCATTTGTGTTTCAACCATTAGATGAGTATCCTACTTCATCCAGTGCACCTTTGGATGATCCTGATGTATGGAGGCCACCTAATAGAGATGCCCCAAGTAGAAGACCCACAAGGTCTGGTCCAATGGCCGCTAGGAAGTCATCACAAGATGGGGCTTGGGCTCGAGGTGCTACTACAAGAACAAGTACGACTAGCCGTGGTGCAAAAGCTGGTGGTACAAGTAAGAATGGAGATGCTGAAGATGGTAAGTCAAAGAAAGTACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTATTGGAAAGCTCTCCTGGAGTGAGATGGGATGACGTGGCAGGGCTGACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTCGTCCTTCCCTTGTGGATGCCTGAATATTTCCAGGGGATTAGAAGACCATGGAAAGGTGTTCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTGTTAGCCAAAGCAGTTGCTACTGAATGTGGTACCACATTCTTCAATGTTTCTTCTGCTACTTTAGCGTCAAAGTGGCGTGGAGAGAGTGAGCGTATGGTGCGATGTTTGTTTGATCTTGCAAGAGCACATGCTCCAAGCACAATTTTCATTGATGAGATTGATTCCTTGTGTAATGCTAGGGGGGCATCTGGGGAACATGAATCATCGAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCCACGAATGAAGATGGTAGCAGGAAAATAGTAATGGTTTTAGCAGCCACCAACTTCCCTTGGGACATAGACGAGGCACTAAGGAGAAGGCTGGAAAAACGTATTTACATTCCTCTTCCTAATTTTGAGAGCCGTAAAGAGCTGATCCGGATTAATTTGAAGACTGTAGAGGTGGCTCCTGATGTAAATATAGATGATGTGGCTCGCCGGACGGAGGGATATAGTGGGGATGATCTGACGAATGTCTGCCGCGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCGGGAAAGACGCGGGATGAGATAAAGAACATGCCCAAGGATGAGATTTCGAAGGACCCTGTGGCCATGTGCGATTTTGAAGAAGCTTTGGCGAAGGTCCAACGAAGTGTTTCACAGGCTGACATTGAGCGCCATGAGAAATGGTTTTCTGAATTTGGATCAGCATAA 1500 0.4633 MSGNSLGGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTVDDPLMRTKWMNVKKALSEETEVVKQLEAERKAFKETPSGSGRRPSSPPISAKSSSSFVFQPLDEYPTSSSAPLDDPDVWRPPNRDAPSRRPTRSGPMAARKSSQDGAWARGATTRTSTTSRGAKAGGTSKNGDAEDGKSKKVQYEGPDPDLAAMLERDVLESSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALAKVQRSVSQADIERHEKWFSEFGSA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0980 499 Gene3D - 389 475 - -
Lele39g0980 499 Gene3D - 4 80 - -
Lele39g0980 499 MobiDBLite consensus disorder prediction 153 172 - -
Lele39g0980 499 Pfam ATPase family associated with various cellular activities (AAA) 251 388 IPR003959 GO:0005524|GO:0016887
Lele39g0980 499 Coils Coil 62 82 - -
Lele39g0980 499 FunFam Katanin p60 ATPase-containing subunit A1 389 475 - -
Lele39g0980 499 ProSitePatterns AAA-protein family signature. 360 379 IPR003960 GO:0005524|GO:0016887
Lele39g0980 499 MobiDBLite consensus disorder prediction 77 192 - -
Lele39g0980 499 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Lele39g0980 499 MobiDBLite consensus disorder prediction 85 113 - -
Lele39g0980 499 SMART AAA_5 247 390 IPR003593 -
Lele39g0980 499 Pfam AAA+ lid domain 410 451 IPR041569 -
Lele39g0980 499 MobiDBLite consensus disorder prediction 177 192 - -
Lele39g0980 499 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 499 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lele39g0980 499 PANTHER AAA DOMAIN-CONTAINING 25 498 - -
Lele39g0980 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 485 IPR027417 -
Lele39g0980 499 Gene3D - 209 490 IPR027417 -
Lele39g0980 499 CDD AAA 245 388 - -
Lele39g0980 499 FunFam Katanin p60 ATPase-containing subunit A1 209 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0980 Lele-ChrLele39 18612047 18615406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0980 203 491 Calmodulin-binding Proteins AT3G56690 40.000 1.19e-50 184