Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0948 ATGCTATGGTCAAAGGGACTTTCTAGGGTTCATGGCGGATTTGATATTGATAAGATTTTTGGGACTATTTCTGTTGTGCCATTAGCTAGGGGAAGGAAGATGAGTAGGCCTGGAGACTGGACGTGCAGGTCATGCCAGCACCTGAACTTTCAGAGAAGGGACATGTGTCAGAGATGTGGGGATTCAAAGTTTGGAGATTTTGTTGGGATTAATGGTGGTGGTGGCTATGGTGGAGGAGGAGGAGGAAGAATGACGACGATGATGGGATCTTCATTTGGTGGTTCTGATGTTCGTCCCGGTGACTGGTACTGTTCTGCCGGAAACTGTGGAGCTCATAACTTTGCGAGCCGATCAAGCTGCTTCAAGTGTGGTGTTTTCAAAGATGACTTTGCTTCTGCCTTCACCACCACCACCACTGATTTCTCTTGTTCCAGACCTTTTGCTTCTGGTTCTTCTAGGCCTGCATGGAAATCTGGCGACTGGATTTGCAACAGGTCAGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAAATGCAGCGCCCCGAGGGACACGTTCTAG 570 0.4842 MLWSKGLSRVHGGFDIDKIFGTISVVPLARGRKMSRPGDWTCRSCQHLNFQRRDMCQRCGDSKFGDFVGINGGGGYGGGGGGRMTTMMGSSFGGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGVFKDDFASAFTTTTTDFSCSRPFASGSSRPAWKSGDWICNRSGCNEHNFASRMECFKCSAPRDTF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0948 189 ProSiteProfiles Zinc finger RanBP2 type profile. 157 188 IPR001876 -
Lele39g0948 189 ProSitePatterns Zinc finger RanBP2-type signature. 40 59 IPR001876 -
Lele39g0948 189 Gene3D - 94 129 - -
Lele39g0948 189 Gene3D - 32 64 - -
Lele39g0948 189 Gene3D - 151 188 - -
Lele39g0948 189 PANTHER ZINC FINGER PROTEIN 95 187 - -
Lele39g0948 189 ProSitePatterns Zinc finger RanBP2-type signature. 161 182 IPR001876 -
Lele39g0948 189 Pfam Zn-finger in Ran binding protein and others 157 186 IPR001876 -
Lele39g0948 189 Pfam Zn-finger in Ran binding protein and others 98 124 IPR001876 -
Lele39g0948 189 Pfam Zn-finger in Ran binding protein and others 36 60 IPR001876 -
Lele39g0948 189 ProSiteProfiles Zinc finger RanBP2 type profile. 36 65 IPR001876 -
Lele39g0948 189 FunFam Ran-binding zinc finger protein 92 129 - -
Lele39g0948 189 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Lele39g0948 189 FunFam Ran-binding zinc finger protein 148 188 - -
Lele39g0948 189 SUPERFAMILY Ran binding protein zinc finger-like 31 66 IPR036443 -
Lele39g0948 189 SMART zf_4 159 185 IPR001876 -
Lele39g0948 189 SMART zf_4 100 126 IPR001876 -
Lele39g0948 189 SMART zf_4 38 62 IPR001876 -
Lele39g0948 189 SUPERFAMILY Ran binding protein zinc finger-like 93 129 IPR036443 -
Lele39g0948 189 SUPERFAMILY Ran binding protein zinc finger-like 150 187 IPR036443 -
Lele39g0948 189 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0948 Lele-ChrLele39 18351199 18352992 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0818 41 17887775 17892799 Lele39g0948 39 18351199 18352992 CCT
Lele42g0806 42 20947397 20954247 Lele39g0948 39 18351199 18352992 CCT
Lele39g0948 39 18351199 18352992 Lele39g0948 39 18351199 18352992 ECH
Lele37g0477 37 3938964 3940785 Lele39g0948 39 18351199 18352992 hybridization
Lele38g0445 38 3622091 3622713 Lele39g0948 39 18351199 18352992 hybridization