Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0945 ATGAGTAACGCTTCTTCTTTCGCTGGTCAATTTGATGTTGATGGGAAGTCCCCTTCTTCATTTGACTTTGAATCCGAATATCTATCGTTCAAGAAGCCCGCGAATCCACCGACACTCCCAAATTCAAGGGCACAGGTAGTGAACGAGGCGAGGATCCGCTATTTCAAGACTCGACTCTGCAGAAAGTTTAGACTAGGAATTTGTATACTTGGGTCCGATTGTAGCTTTGCCCATAGCGTTGGAGAGCTTCGGAGGCAAGAATTTGGCAATGACGATAGAACAATTCAGGAGTCAAAACTATGCAGAATGTTCTATCAGGGGCAACAATGCTCTTACGGAAACACCTGCCGTTTCCTTCATACAGGGCCCGGCGGTTTGAATCATAGAGACACTGCAACAGTAGAAGTAATTCCTACAGGACATGGTAAAAGGAAACATGATCGATTAGAGTTAAAGAGTGGGCTTGATGAGAGTTCTGGTGCTGAAGTGAATCCAAAGAGAGAGCTGCTGAAAACAAAGAAGTGCATCAAGTGGGACATGAATGGGCATTGCCCGACATTTCTCCATTCAGAAAATAGCCATGGAATTATAAAATCCATAGATAGGAAAAAGTCAGAATTAGGGAAGCTTGATGGCTACTCAACAGCTGAATGCAGGGTTGTGCAAACTTCTGCTGCTGCTGCTACTCCTATTACGAATGTGTCAAGTGGTGCAGTGTCAACTGGCACTTCGCTTAAGAATCTGAAGGAATCATTCGCATGGGATTACAAATTCAACAGAAATTCACTACACAGGATCGGTCGCATCCATGCTGATTGGATTTAA 825 0.44 MSNASSFAGQFDVDGKSPSSFDFESEYLSFKKPANPPTLPNSRAQVVNEARIRYFKTRLCRKFRLGICILGSDCSFAHSVGELRRQEFGNDDRTIQESKLCRMFYQGQQCSYGNTCRFLHTGPGGLNHRDTATVEVIPTGHGKRKHDRLELKSGLDESSGAEVNPKRELLKTKKCIKWDMNGHCPTFLHSENSHGIIKSIDRKKSELGKLDGYSTAECRVVQTSAAAATPITNVSSGAVSTGTSLKNLKESFAWDYKFNRNSLHRIGRIHADWI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0945 274 SUPERFAMILY CCCH zinc finger 52 84 IPR036855 GO:0046872
Lele39g0945 274 Gene3D - 49 85 - -
Lele39g0945 274 PANTHER CCCH ZINC FINGER/TIS11-RELATED 36 125 IPR045877 GO:0003729
Lele39g0945 274 Gene3D - 86 196 - -
Lele39g0945 274 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Lele39g0945 274 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Lele39g0945 274 SMART c3hfinal6 169 191 IPR000571 GO:0046872
Lele39g0945 274 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Lele39g0945 274 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872
Lele39g0945 274 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Lele39g0945 274 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Lele39g0945 274 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0945 Lele-ChrLele39 18335663 18337337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0945 56 121 C3H Transcription Factor Family AT1G68200 38.806 1.33e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele39g0945 zf-CCCH 2.2e-07 CL0537