Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0933 ATGGTGCAATCAAAGAAATTCAGAGGTGTCAGACAGCGTCATTGGGGCTCATGGGTTTCTGAGATTCGCCATCCTTTATTGAAAAGAAGGGTGTGGCTAGGGACGTTTGATACTGCAGAAGAAGCAGCACGAGCTTACGATGAAGCAGCCATTTTGATGAGCGGTAGAAACGCCAAAACAAACTTCCCAGTGGCCACCAATAATAACAATAACAATCAAGATCATAATTCTTCTTCTTCATCATCCCCATCCTTTTCTGAAGCTCTTAGTGCAAAGCTTCGGAAGTGCTGTAAATCGCCATCGCCATCTCTCACATGCTTGAGGCTGGACACAGAGAACTGTCACATCGGAGTGTGGCAGAAGCGAGCAGGGCCTCGCTCTGACTCCAACTGGGTCATGATGGTGGAGCTGGAAAGGAAGAAACTTGAAGGGTCAGAAATGACGAGGGAGTTGCCGGCGCCGGAGACGGGGATGAAGACGAAGGAGAAGGTGAAACCAGAAGAAGAAGATCAGAACAGTGAGCTGGACGAGGAACAGAAGATGGCGTTGCAGATGATAGAAGAACTCCTCAATAGGAACTGA 582 0.4828 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVATNNNNNNQDHNSSSSSSPSFSEALSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSDSNWVMMVELERKKLEGSEMTRELPAPETGMKTKEKVKPEEEDQNSELDEEQKMALQMIEELLNRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0933 193 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 159 - -
Lele39g0933 193 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 MobiDBLite consensus disorder prediction 146 179 - -
Lele39g0933 193 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 MobiDBLite consensus disorder prediction 155 179 - -
Lele39g0933 193 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lele39g0933 193 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lele39g0933 193 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lele39g0933 193 Coils Coil 172 192 - -
Lele39g0933 193 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lele39g0933 193 MobiDBLite consensus disorder prediction 62 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0933 Lele-ChrLele39 18247904 18248920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0933 1 193 AP2-EREBP Transcription Factor Family AT1G15360 61.137 1.76e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g0933 AP2 1.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0933 39 18247904 18248920 Lele39g0933 39 18247904 18248920 ECH
Lele37g0493 37 4025899 4026924 Lele39g0933 39 18247904 18248920 hybridization
Lele38g0460 38 3726710 3727764 Lele39g0933 39 18247904 18248920 hybridization