Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0932 ATGGCAGAAACTCATCTTCATGGGACTCTCCACGCCACCATTCATGAGGTGGAAAAGTTAAGTGCTAGTGAAGAAGATGGCAACATTTTCAGCATGCTTAAGTCAAAAATCGAGGACACGGTTGGTGTAGGAAAGGGATCATCCCAAATCTACGCAACCATTGATCTGGAAAAAGCAAGAGTTGGAAGAACCAGAGTGTTGGAAAACAGAGATTCCAATCTCAGGTGGGAAGAATCTTTCCACATCTACTGTGCCCACGTGGCATCCAACGTCATCTTCACCGTCAAAGGCGTCAACAAGATAGGCGCAACCTTAATCGGACGAGCCTATGTCCCCGTCGACAACATCGTCGGTGGCGACACCTACGATGAATGGATCGAAATCTTAAACGAGGACAAAGAACCCATCGGTTCCAAAATCCACGTCAAGCTCCAATACTTCGATGTCACAAAAGACAGAAATTGGAATCGAGGTATTAGAAGCCCTAAGTACCCAGGAGTACCCTACACTTTCTTCTCACAAAGACAAGGTTGTAAGGTTACCTTGTATCAGGACGCTCATGTCCCTGAGGATTTCATCCCCAGAATCCCCCTCTCGGACGGCAAATATTACCAACCTCATCGGTGTTGGGAAGATGTTTTCGACGCAATTACTAATGCTAAGCACTTGATTTACATCACTGGTTGGTCTGTTTACACTGAGATTAAACTAGTGAGAGATGCTAAGAGGCCAAAAGATGGAGGTCATGTAACCCTAGGACATCTTCTGAAGGAGAAAGCAGACCAGGGTGTTAGGGTTTTAATGCTTGTTTGGGACGATAGAACTTCTGTTAGTTTGTTAAAAAAAGACGGGTTAATGGCAACACATGATGAAGAAACAGAGAAGTTTTTTGAAAACACTCAAGTTCACTGTGTTTTATGCCCTCGTGATCCCGACGAGGGTGCCGGAAGCATAATTCAGGACGTTCAAACTTCCACCATGTTCACTCATCACCAGAAGATCGTAGTGGTCGACAGTGAGCTTCCGGGACGAGGTTCGTCAAGCAAGAGAAGAATAATGAGTTTCGTGGGTGGGCTTGATTTATGCGACGGAAGATACGACACTGCGTTTCATTCTCTTTTCAGAACATTGGATACGGCTCATCACGATGACTTTCATCAACCTAACTTCCCCGGCGCCGACATCAATAAAGGCGGACCGAGAGAGCCATGGCATGATATACATTCACGCCTTGAAGGACCGGTTGCTTGGGATGTTTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGAGGGAAGGATGTTCTTATGTCGCACGGAGAGCTGGAGGAGATAGTTATTCCACCATCTCCGGTGATGTTCCCGGAGGATCACGAGACGTGGAATGTTCAGTTGTTCCGATCTATCGACGGTGGCGCCGCCTTCGGATTCCCAGAAAGCCCCGAGGAAGCAGCCGACGCAGGGCTGGTGAGTGGGAAAAACAACATCGTAGATAGAAGCATTCAAGACGCATATATTCATGCAATAAGAAGAGCGAGGAAGTTCATATACATAGAGAATCAGTACTTTCTGGGAAGCTCTTATGCATGGAGCGCTGAAGATGGCGACATAAAACCAGAAGACGTTAACGCATTGCACGTGATCCCCAAGGAGCTATCACTGAAAATCGTGAGTAAGATTGAAGCAGGAGAGAGGTTCACGGTGTACGCGGTGGTGCCGATGTGGCCGGAGGGCATACCGGACAGTGGATCGGTGCAGGCGATACTGGATTGGCAGAGGAGAACGATGGAGACTATGTATAAAGACATTGTCGACGCGTTGGAGGCAAAGGGAATAAGGGAAGATCCTCGCAAGTATTTAACATTCTTCTGCCTTGGAAACAGAGAAGTGAAACGAGACGGCGAGTATGAACCAGCAGAACAACCAGAACCTGATTCTCCTTATGAAAAAGCCCAACAAGCTCGTCGCTTCATGATTTATGTCCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCAAACATAAACCAGAGATCAATGGACGGAGCGAGGGACACAGAGATAGCGATGGGGGGATATCAGCCGCATCATTTGGCGACAAGCAAGGGGCCGGCTAGAGGTCAGATCCATGGATTCCGTATGGCGTTGTGGTATGAGCATCTTGGGTTGATGGACGAGTGCTTTAATCACCCAGAAAGTGAAGAATGTGTGGAGAAGGTGAACCAGATGGCGGACAAGTACTGGGAACTCTACGCTGATGAATCGTTTAATGAAGATCTTCCAGGTCACTTGCTGCGTTATCCTGTTAAGGTTTCAAGGGAAGGAAGAGTTCAAGAACTTCAAGGCTTTGAGTTCTTCCCTGATACTCAGGCTCGTATTCTTGGCGCCAAATCTGACTACATGCCGCCAATCCTTACTACTTAA 2439 0.4699 MAETHLHGTLHATIHEVEKLSASEEDGNIFSMLKSKIEDTVGVGKGSSQIYATIDLEKARVGRTRVLENRDSNLRWEESFHIYCAHVASNVIFTVKGVNKIGATLIGRAYVPVDNIVGGDTYDEWIEILNEDKEPIGSKIHVKLQYFDVTKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVTLYQDAHVPEDFIPRIPLSDGKYYQPHRCWEDVFDAITNAKHLIYITGWSVYTEIKLVRDAKRPKDGGHVTLGHLLKEKADQGVRVLMLVWDDRTSVSLLKKDGLMATHDEETEKFFENTQVHCVLCPRDPDEGAGSIIQDVQTSTMFTHHQKIVVVDSELPGRGSSSKRRIMSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADINKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDVLMSHGELEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPESPEEAADAGLVSGKNNIVDRSIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAEDGDIKPEDVNALHVIPKELSLKIVSKIEAGERFTVYAVVPMWPEGIPDSGSVQAILDWQRRTMETMYKDIVDALEAKGIREDPRKYLTFFCLGNREVKRDGEYEPAEQPEPDSPYEKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDTEIAMGGYQPHHLATSKGPARGQIHGFRMALWYEHLGLMDECFNHPESEECVEKVNQMADKYWELYADESFNEDLPGHLLRYPVKVSREGRVQELQGFEFFPDTQARILGAKSDYMPPILTT 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0932 812 Gene3D Endonuclease Chain A 472 703 - -
Lele39g0932 812 FunFam Phospholipase D delta 200 445 - -
Lele39g0932 812 SMART pld_4 326 365 IPR001736 GO:0003824
Lele39g0932 812 SMART pld_4 657 684 IPR001736 GO:0003824
Lele39g0932 812 Pfam Phospholipase D Active site motif 326 365 IPR001736 GO:0003824
Lele39g0932 812 Pfam Phospholipase D Active site motif 658 684 IPR001736 GO:0003824
Lele39g0932 812 Gene3D Endonuclease Chain A 199 444 - -
Lele39g0932 812 CDD C2_plant_PLD 2 147 - -
Lele39g0932 812 PANTHER PHOSPHOLIPASE D 6 800 IPR015679 -
Lele39g0932 812 Pfam C2 domain 8 128 IPR000008 -
Lele39g0932 812 Gene3D C2 domain 5 157 IPR035892 -
Lele39g0932 812 PIRSF PLD_plant 1 812 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele39g0932 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 657 684 IPR001736 GO:0003824
Lele39g0932 812 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 149 IPR035892 -
Lele39g0932 812 SUPERFAMILY Phospholipase D/nuclease 150 437 - -
Lele39g0932 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 365 IPR001736 GO:0003824
Lele39g0932 812 ProSiteProfiles C2 domain profile. 1 126 IPR000008 -
Lele39g0932 812 FunFam Phospholipase D 468 703 - -
Lele39g0932 812 SMART C2_3c 9 125 IPR000008 -
Lele39g0932 812 Pfam Phospholipase D C terminal 730 802 IPR024632 -
Lele39g0932 812 SUPERFAMILY Phospholipase D/nuclease 489 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0932 Lele-ChrLele39 18234998 18239140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0932 1 812 Phospholipase D Gene Family (Wang group) AT3G15730 74.201 0.0 1303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0932 39 18234998 18239140 Lele41g0775 41 17611031 17614078 CCT
Lele39g0932 39 18234998 18239140 Lele42g0767 42 20694457 20699388 CCT
Lele39g0932 39 18234998 18239140 Lele43g0622 43 5498404 5507927 CCT
Lele39g0932 39 18234998 18239140 Lele44g0574 44 4465341 4468198 CCT
Lele39g0932 39 18234998 18239140 Lele40g0433 40 3572382 3575928 ECH
Lele39g0932 39 18234998 18239140 Lele39g0932 39 18234998 18239140 ECH
Lele37g0494 37 4034147 4038403 Lele39g0932 39 18234998 18239140 hybridization
Lele38g0461 38 3734753 3738155 Lele39g0932 39 18234998 18239140 hybridization