Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0923 ATGTTTCTTTCGCACACCGTTCTTGACTCTTTGTCATCTTTCACGGTGAGGCGTTTTGTTTCAGGCAAGAATAGAATCAACCTTTGGGGTGGAGGAACAGTAAGATTAAGAGGCAGAGAAATTGGAGAAGCTGGGATGGGTATGAAATTTTGTCCAATATTTTTCTGTGCAAAGGGTTCAGATCGAAAAGCACGAAGTAAGAAAGTGTCAGCATGGAGAGTGTTTTCTTTGAAGGAACTGCACTCAGCGACAAATAATTTTAACTATGATAACAAGCTTGGAGAAGGGGGATTTGGCAGTGTATACTGGGGCCATCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTAAAGGTTTGGAGCAACAAAGCAGATATGGAATTTGCTGCTGAAGTTGAGATATTGGCGAGAGTAAGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCCGAAGGGCAGGAAAGACTAATCGTATATGATTATATGCCAAATTTGAGCCTACTCTCTCATCTCCATAGACAGCACTCTGCAGATGGCCTTCTTAATTGGAACAGGCGCATGAATATCGCAATTGGGTCGGCTGAGGGAATCGTATATCTTCACCACCAAGCAACACCCCACATAATCCACAGGGATATCAAATCGAGCAATGTGTTACTGGATGCGGATTTCCAGGCTCGGGTTGCTGATTTCGGTTTTGCTAAGTTGATTCCTGACGGGGCAACCCACGTGACCACGAGAGTCAAAGGAACCCTCGGCTACCTTGCGCCGGAATACGCCATGCTTGGTAAGGCATCCGAGAGTTGTGACGTCTATAGTTTCGGGATTCTCCTGCTAGAACTTGCAAGTGGCAAGAAACCAATAGAAAAACTAAGTACTTCGATGAAGCGATCGATAGCTGATTGGGTGCTACCATTGGTTATTGAGAAGAGATTTAGTCAACTTGCAGATCCAAAGCTAAAGGGTAAGTATGTAGAGGAAGAACTCAGAAGAATGACTCTTGTTGGACTTGTATGTGCTCAAAGTCAGCCCGAGAAGAGACCCACCATGCTCGAGGTGGTCGAGCTGCTTAAGGGAGAATCTAAGGATAAGTTATCCGAGTTAGAAAAGAATGAATTGTTCACAAACCCTCGAGCTTTAGAAAACAGTGATGGAGCTTCAGTTGCTGAAGATAGTTCAGACTTCATCTCAGAGGAGAAGGAATCAACATTTGAGATGAAAGAGAGTAGTGGGCTATAG 1242 0.4396 MFLSHTVLDSLSSFTVRRFVSGKNRINLWGGGTVRLRGREIGEAGMGMKFCPIFFCAKGSDRKARSKKVSAWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGHLWDGSQIAVKRLKVWSNKADMEFAAEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHRQHSADGLLNWNRRMNIAIGSAEGIVYLHHQATPHIIHRDIKSSNVLLDADFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKKPIEKLSTSMKRSIADWVLPLVIEKRFSQLADPKLKGKYVEEELRRMTLVGLVCAQSQPEKRPTMLEVVELLKGESKDKLSELEKNELFTNPRALENSDGASVAEDSSDFISEEKESTFEMKESSGL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0923 413 SUPERFAMILY Protein kinase-like (PK-like) 68 358 IPR011009 -
Lele39g0923 413 ProSiteProfiles Protein kinase domain profile. 87 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0923 413 Gene3D Phosphorylase Kinase; domain 1 57 162 - -
Lele39g0923 413 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 398 - -
Lele39g0923 413 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Lele39g0923 413 Pfam Protein kinase domain 88 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0923 413 SMART serkin_6 87 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0923 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lele39g0923 413 Gene3D Transferase(Phosphotransferase) domain 1 163 376 - -
Lele39g0923 413 MobiDBLite consensus disorder prediction 377 413 - -
Lele39g0923 413 FunFam PTI1-like tyrosine-protein kinase At3g15890 59 162 - -
Lele39g0923 413 MobiDBLite consensus disorder prediction 377 391 - -
Lele39g0923 413 CDD STKc_IRAK 93 360 - -
Lele39g0923 413 Coils Coil 352 372 - -
Lele39g0923 413 MobiDBLite consensus disorder prediction 394 413 - -
Lele39g0923 413 FunFam PTI1-like tyrosine-protein kinase At3g15890 163 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0923 Lele-ChrLele39 18170736 18173635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0923 75 361 Trihelix Transcription Factor Family AT1G70460 50.515 1.12e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lele39g0923 Pkinase 1.8e-44 CL0016