Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0917 ATGAATCTTGTATTTGGCCTTGTAGTGGTCATGCAAGTTGCTTTTGAAGGAAAAGTAGAATTTAGTAAGAAGATCTTCATTATTCAATTTTCTAAGTATGAATTTACCCAAGCACCAGTTAATCTGGAGTTATTGCAACCAATGGTAGAAGGCTATGGCATTGTTCATCACATTCTGTGTTTTGAGGATGGCGCTAGCCATTGTTTATTTTCCTGGATTATACCTGTTGTTATGGAGATTGATACACTTGTTAGCCCTATCAATAGCAATGAGCAATCTGACCTCGAAACACAACGTGGCAAGTGTAGGAGAAAAAAGTCAATTGTGTGGGAACACTTCACAGTAAAAGCTGTTGGAGATGGCATTACTAGGGCTTACTGCAAACAGTGTAAAAAATCATTTGCTTATATTTCTGGCTCAAAAGTTTCTGGCACAAGTCATCTGAAACGACACATTTCCTTGGGAATCTGTCCAGCGAGTCGACAGAAAATTCAGCAAGGCCAACATTTAAAAAACTGCAATTCTGAAGATGCTGCTCCACCAAAGAAACGTGCAAGAGCAACCCTTGGAATGGGTGTACTACCATATGATCAGGAACGTTGCAACAATGAGATGGCGAAAATGATAATTGCACAAGATTATCCCCTTCAAATTGTGGAACACAAGGCCTTCATGGATTTTGTATGGACTCTTCAGCCCCAGTTCAACTCACTAAGCTCTACCGATGTCCATGGGGATTGCATCTCTATGTACCACAGTGAGAAGCAAAACCTCTTGAATCTTGTCAGACAAATTCCTGGACGGGTCAACCTGACCTTGGATTTATGGACATCAAACCAGACAGTGGGCTATGCTTTTCTTCGCGGACATTTCATTGATGGTGATTGGAATGTACACCATCCTATTCTTAATGTGATAATGGTGCCATTTCCTGACTCTGAAGATTCCTATAATAAAACGATTGTGACCTGCCTAACTGATTGGCAGTTGGAAGGTCGGGTATTTACACTTGCACTTGATCAATCCTCTAATGAGACTGTGATGGGAAATCTTAGAGGACTCCTTTCTGCTAGGAATCCGGTGATTTTCAATGGGCAGTTACTAAGCAGGAACTGCTTTGCCCGGGTTCTTAGTCGTCTTGCCCTAGATGCATTATGGGCAATGAGAGAAACCATCCGCAAAATGTTCCAATTCACTAATGCAAATGCAAATGAAATTTTGAGTTTAGGTCTATCAGTGTTGAGATCAACTGTCAGATTGGCGACTACTTGAGCAATTGTGAAACTGCAAGGGGTCGATGTAAAATCATTAAAATAG 1317 0.4093 MNLVFGLVVVMQVAFEGKVEFSKKIFIIQFSKYEFTQAPVNLELLQPMVEGYGIVHHILCFEDGASHCLFSWIIPVVMEIDTLVSPINSNEQSDLETQRGKCRRKKSIVWEHFTVKAVGDGITRAYCKQCKKSFAYISGSKVSGTSHLKRHISLGICPASRQKIQQGQHLKNCNSEDAAPPKKRARATLGMGVLPYDQERCNNEMAKMIIAQDYPLQIVEHKAFMDFVWTLQPQFNSLSSTDVHGDCISMYHSEKQNLLNLVRQIPGRVNLTLDLWTSNQTVGYAFLRGHFIDGDWNVHHPILNVIMVPFPDSEDSYNKTIVTCLTDWQLEGRVFTLALDQSSNETVMGNLRGLLSARNPVIFNGQLLSRNCFARVLSRLALDALWAMRETIRKMFQFTNANANEILSLGLSVLRSTVRLATTXAIVKLQGVDVKSLK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0917 438 SUPERFAMILY Ribonuclease H-like 266 396 IPR012337 -
Lele39g0917 438 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 87 394 - -
Lele39g0917 438 SUPERFAMILY beta-beta-alpha zinc fingers 107 154 IPR036236 -
Lele39g0917 438 SMART bed5 104 160 - -
Lele39g0917 438 ProSiteProfiles Zinc finger BED-type profile. 104 164 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0917 Lele-ChrLele39 18124479 18128989 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0777 41 17626307 17636871 Lele39g0917 39 18124479 18128989 CCT
Lele42g0768 42 20702924 20714452 Lele39g0917 39 18124479 18128989 CCT
Lele39g0917 39 18124479 18128989 Lele41g0748 41 17397299 17398508 CCT
Lele39g0917 39 18124479 18128989 Lele42g0745 42 20484126 20485848 CCT
Lele39g0917 39 18124479 18128989 Lele43g0646 43 5741429 5742516 CCT
Lele39g0917 39 18124479 18128989 Lele44g0599 44 4652592 4654360 CCT
Lele39g0917 39 18124479 18128989 Lele39g0917 39 18124479 18128989 ECH
Lele38g0479 38 3857618 3859711 Lele39g0917 39 18124479 18128989 hybridization