Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0896 ATGTCTAAAATTATGTTGCAGGACATGGATGATGCTGAAGACTTCCACGACCAGTTTTGTCACATGATGATGTCTTTTGATGAGGATGACCAAGAGTTTCTCAGAAACATTCTTCAGCAGCAGCCAGCTGGTTGTGGAAATAACAATAAGATTAAGAATAATGAGTTGTCTTCTTCTTCTCAAAGCGAAGAAGATAAATCCTTTCCCACCGTTGATTTCTCCACTGATGGCTCCGGCAACCGTCGTGGTGGTGGTGGTTTGAATGTGCACAACAAAAACCGTGTGATGTCTGCTAAATCATACATTTTATCATTTGATCAATCCAACGTAATACCAGCAGAAGAAGAAACAATGTCAAAACAAGAAGAATCTAGTACCTCTGAACTTTGTTCATTAAAAAGGATCAGAGAGACAGGTAATAATATTGAGCCCAGAAAGAAGACTAGAAGCTGTTCAGAGACTGCAAATCACATAATGGCAGAGAGGAGGAGGAGGCAGCAACTCACAGAGAGATTTATTGCACTTTCTGCAACTATTCCGGGCTTGAAGAAGATGGACAAAGCTACAATTCTTCAAGAAGCGACCAAATACGTGAAGCAGCTTCAAGAACGAGTAACAGAGCTAGAGAAACAAAATAGTGTAATCAACAGCACAACAACAACATTAGAGTCATCAATGATATCGATAAAGAAATGTGAGCTACACAGAATTAATGATGATGATCTGTGTTGTGAAGCAAATGATCAAGTGTTGCCTCAGATTGATGCGAAAGTGTTGGAGAATCAAGTGCTGTTTGGAATCTATTGTGAGAAGCAAAAGGGCATTGAGTTTAAAATATTGACTTTGCTTGAAAATTTTCATCTTCATGTCACCAGTAGCAGCGTCTTGCCATTTGGGAATTCCACTCTTGGCATCACCATCATTGCCCAGATGGGAGAGGAATACAGAATGACAGTGAATGAAGTGATGAAAAATCTACGACAAGTTCTGTCAAAATCACACGATGCTGATCCGTACTAG 1020 0.398 MSKIMLQDMDDAEDFHDQFCHMMMSFDEDDQEFLRNILQQQPAGCGNNNKIKNNELSSSSQSEEDKSFPTVDFSTDGSGNRRGGGGLNVHNKNRVMSAKSYILSFDQSNVIPAEEETMSKQEESSTSELCSLKRIRETGNNIEPRKKTRSCSETANHIMAERRRRQQLTERFIALSATIPGLKKMDKATILQEATKYVKQLQERVTELEKQNSVINSTTTTLESSMISIKKCELHRINDDDLCCEANDQVLPQIDAKVLENQVLFGIYCEKQKGIEFKILTLLENFHLHVTSSSVLPFGNSTLGITIIAQMGEEYRMTVNEVMKNLRQVLSKSHDADPY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0896 339 MobiDBLite consensus disorder prediction 43 77 - -
Lele39g0896 339 Gene3D - 151 224 IPR036638 GO:0046983
Lele39g0896 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lele39g0896 339 PANTHER BHLH TRANSCRIPTION FACTOR 24 332 - -
Lele39g0896 339 MobiDBLite consensus disorder prediction 43 91 - -
Lele39g0896 339 Coils Coil 191 218 - -
Lele39g0896 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 222 IPR036638 GO:0046983
Lele39g0896 339 SMART finulus 158 207 IPR011598 GO:0046983
Lele39g0896 339 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0896 Lele-ChrLele39 17884510 17886806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0896 148 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.120 3.77e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g0896 HLH 3e-11 No_clan