Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0895 ATGGATGAGATCGATTTCTTCAATCAATCACACAAGACTTATTCTTTTGATGATGATGAAGCGTTTCTTAGGGAGATCTTTCGCCAACCTTCTTTCTCTTCTGAGAGTGACAGTACTCATTCTTCCTCTATTCAAAACAACCCCGTCACCGCCGCATCGGATCCTGGTGGTGGGGTTCCCGCCGCCGTCACAGCAACAAACCCCTCAGTTAACAGCTTATCTTTGGATAATAATGACTCCTCCGGCTCCGGCAGCCAGCTGAAGCGTAACAGCTCCAGCTCGAGCTCAATCGCCTCGAAACTTGGTAACTTGTCGGACAAACCTGTGGTAATATCCTCGTCGTCGTCTCCGTCAACTTATATTCTGTCTTTCGATAACTCAGCAGTACTACCAGCCACCTCCTTGAAGAGTGGTAATCAAGAGAAATTAGCGACTAGTACAGGAGGAGGAGGAGGAGGAGGCATACGCGCTTCTCAAAAGCGAACCCTAGAAAACCATAATAGTGATCATCAACCAAAAGCTAATCAAGGGACAAAGAAGACTAGAAGTTCATCTGAATCATTGGATCACATAATGGCTGAGAGAAAAAGGAGACAAGAACTCACTGAGAAGTTCATTGCACTCTCTGCTACAATTCCTGGTCTCAAGAAGATTGACAAGGCTTCTATACTAAGCGAAGCTATCATTCACGTGAAGCAACTTAAAGAACGAGTGAGAGAGTTAGAGGAGCAGAACAAGAAGATGATGAGTAATAATATGGAGCAGTCAGTGTCGTACATGAAGAAGAAGAAGAAGAAGTCGTCGTCGTCACCGTCGCTGCCGAGACAAGATAATATTGAAGACACGACGACGACGTCTTGTGAAATAATGAGCTCTGATAATTACTTTAAAATTAGCGAATCACTTCCAGAAGTTGAAGCAAGAGTTTTACAGAGGCAAGTCCTCATCAGAATCCACTGTGACAATGAAAAAGGAGTTATTATTAACTTATTGGCTCAGCTCCATGGTCTTCATTTCTCCATAATCAGTGACAGTGTATTGCCATTTGGAAATTCTACTCTTGATATTACGATCATTGCTGAGGTCGATGAGGAACACAAGGTAGCAGCGAAGGAACTTGTGAAAAAGCTGAGAATGACTCTGTTGAAGTCAGCTGACTGA 1161 0.4358 MDEIDFFNQSHKTYSFDDDEAFLREIFRQPSFSSESDSTHSSSIQNNPVTAASDPGGGVPAAVTATNPSVNSLSLDNNDSSGSGSQLKRNSSSSSSIASKLGNLSDKPVVISSSSSPSTYILSFDNSAVLPATSLKSGNQEKLATSTGGGGGGGIRASQKRTLENHNSDHQPKANQGTKKTRSSSESLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAIIHVKQLKERVRELEEQNKKMMSNNMEQSVSYMKKKKKKSSSSPSLPRQDNIEDTTTTSCEIMSSDNYFKISESLPEVEARVLQRQVLIRIHCDNEKGVIINLLAQLHGLHFSIISDSVLPFGNSTLDITIIAEVDEEHKVAAKELVKKLRMTLLKSAD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0895 386 Gene3D - 174 252 IPR036638 GO:0046983
Lele39g0895 386 MobiDBLite consensus disorder prediction 27 109 - -
Lele39g0895 386 SMART finulus 191 240 IPR011598 GO:0046983
Lele39g0895 386 MobiDBLite consensus disorder prediction 64 109 - -
Lele39g0895 386 PANTHER BHLH TRANSCRIPTION FACTOR 28 383 - -
Lele39g0895 386 Pfam Helix-loop-helix DNA-binding domain 190 235 IPR011598 GO:0046983
Lele39g0895 386 MobiDBLite consensus disorder prediction 29 52 - -
Lele39g0895 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Lele39g0895 386 Coils Coil 224 251 - -
Lele39g0895 386 MobiDBLite consensus disorder prediction 137 189 - -
Lele39g0895 386 MobiDBLite consensus disorder prediction 249 284 - -
Lele39g0895 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 256 IPR036638 GO:0046983
Lele39g0895 386 MobiDBLite consensus disorder prediction 162 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0895 Lele-ChrLele39 17876526 17879505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0895 189 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 40.415 8.83e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g0895 HLH 1.4e-07 No_clan