Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0882 ATGAATTATGATTTTCACGGAAGTAGTGGAAGATGTTATGCAGAAAGAGCTCCATGTAGTGCAGGAGATGATGAAAATGAAGATGAGGAGGATGAACGAGACAAGAATATATTTGAAGTCATTCTTAAAGGACCAGAGGATGAAAATTTAAGAGCTATGTTTCGTGTCCGAGGAAGGTGGGCCCGATTCTCAGGGCCGTTCAAGCTTCTTCGAACCGCATCATTATGTAGCAACTCTAAGAACTCTTCCAGCAATTCCACGAAGAACGACAAGATTATTCGCAATGAAAGGTATCGGCAGCTGGAGAATCTTGACTTCATGACTGCGGCAAAGATCCTTTTTACCGACCCTCCAAAGGAAAAGAAATTTGGGCTTGATTTCCATCTTGTGCAACTTTTCTTTGCCTGCTTGCCTTCTTTAGCTGTATATTTGGTGGCTCAATATGCTCGTTATGATATGAAAATAATGGAGGCGGAAGTGGAGCAGAAAAGGAAGATAAGGGATGAAAAGGAAGCAAAAGAGAGAGAAGAATTAGAAAAGTTAAATCCCCCTCCCCTTGATCCACCACTTCAGGAGGTGAAAGTGAGACTAGACAAACTCGAGGAGGCAGTAAAGGGGATTGTGGCTGAAACAAAGAAACAATCAAACTGCAACCTCCCTGAAAATCAAGTGAAAGAAGATGATGAGAAAAAACATGCCAAGTCTTTTTCTACAGAAAGCGACAAAAACAATTCTTTACCACCAGATAAAGTTGTGGAGAAAGATAATAATCTTGGTAAGCCTGTTAAGCCAAGCCCAGAATCAGGCCAAGAGAGTCCAAAGAATGAAACGGCAGCTCCAAAATCTTCTCCCCATGACCAGAAAAGCCACGGTAATGGTGGTGGTAGAAGGAGTGAGCTGCAAGATCGAACGAGTACTCTTATGGTATGGTCAAGCATGTGGTCTTACCAATGGATCCATCTGACGGTTCCTATTGAGAGACTAGCTTTGCAGCACATTCATTCAGAAGTGTTTGCCGCGCAAACTTGCACAAAAAGACAAAGGTTTGAGAACTTGGTGGCATTTTTCTCGATAATGGATGGTTGCAAAAAATCTTCTATACATGTCCAGTCAGACAATTCTATCCATGTCATACAATTCTCTCCATTTCTTTGTGACTATGGCCGTTTAGCTAACAAAGGGGACGACTTTGAAGATTTCGCTCACCGAGGCGCTAAAATCCTGTTGCATAACAAAGGGAATGCTAAGCCTAACAAAAAAGAAATTGAAGTTTCTTCTTCTGGTGATGATGACAAGGAAAATGCAGAGCCCAAAAACATCGCCAGAAGGACTATCTGGGAGCACATTTTTCTCTCTTTATACCTATGCAAAGGACGACAGAATAGGAAACTGGCTGTGGCTTACCATAAGAGACGAAATGGGAGGTCTCAAGTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCTAATTCAGATAATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGGTCAGGGATATGGTCATGATTGCCGGGGTAAACAGCCAAAACCGCCTCTTGCTGTCATGGCGTAA 1599 0.4215 MNYDFHGSSGRCYAERAPCSAGDDENEDEEDERDKNIFEVILKGPEDENLRAMFRVRGRWARFSGPFKLLRTASLCSNSKNSSSNSTKNDKIIRNERYRQLENLDFMTAAKILFTDPPKEKKFGLDFHLVQLFFACLPSLAVYLVAQYARYDMKIMEAEVEQKRKIRDEKEAKEREELEKLNPPPLDPPLQEVKVRLDKLEEAVKGIVAETKKQSNCNLPENQVKEDDEKKHAKSFSTESDKNNSLPPDKVVEKDNNLGKPVKPSPESGQESPKNETAAPKSSPHDQKSHGNGGGRRSELQDRTSTLMVWSSMWSYQWIHLTVPIERLALQHIHSEVFAAQTCTKRQRFENLVAFFSIMDGCKKSSIHVQSDNSIHVIQFSPFLCDYGRLANKGDDFEDFAHRGAKILLHNKGNAKPNKKEIEVSSSGDDDKENAEPKNIARRTIWEHIFLSLYLCKGRQNRKLAVAYHKRRNGRSQVTIAQNVKGLLSNSDNSFLGTVIANFMGSKYHIWGQGYGHDCRGKQPKPPLAVMA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0882 532 MobiDBLite consensus disorder prediction 214 301 - -
Lele39g0882 532 PANTHER F23A5.5 53 274 - -
Lele39g0882 532 Coils Coil 153 179 - -
Lele39g0882 532 Gene3D Tubby Protein; Chain A 439 529 IPR025659 -
Lele39g0882 532 MobiDBLite consensus disorder prediction 222 238 - -
Lele39g0882 532 MobiDBLite consensus disorder prediction 1 34 - -
Lele39g0882 532 Coils Coil 190 210 - -
Lele39g0882 532 MobiDBLite consensus disorder prediction 268 289 - -
Lele39g0882 532 SUPERFAMILY Tubby C-terminal domain-like 444 522 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0882 Lele-ChrLele39 17757681 17765190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0882 457 531 TUB Transcription Factor Family AT1G16070 56.000 2.37e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele39g0882 Tub 5.2e-05 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0882 39 17757681 17765190 Lele39g0882 39 17757681 17765190 ECH
Lele37g0547 37 4498016 4509497 Lele39g0882 39 17757681 17765190 hybridization
Lele38g0521 38 4284417 4293321 Lele39g0882 39 17757681 17765190 hybridization