Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0870 ATGGACAATGAGGAGATTCCTTCAGCACCTACAACACCAGGGACTCCTGGTGGACCTCTTTTTGGAGGTTTCAAGTCTGATCAGAGAACTAATGGCTATGGAAAGAAGAAATCGCTTCTCAAGAGTTGTAAGTGTTTCAGTGTTGAAGAATGGAATGTAGAAGAAGGAGCTTTGCCCACTGTCTCTTGCTCATTGCCTCCTCCTCCCATCCCTCTTGCAAGAAAGGTGGGAGCTGAGTTCGTTGGCACTCTGATTTTAATGTTTGCTGGGACAGCCGCTGCTATAGTGAACCAGGAGACCCAAGGCGCCGAGACTCTCATCGGCTGCGCCGCCACCACTGGTCTGACGGTCATGATCGTCATCCTCTCCACCGGCCACATCTCCGGCGCTCATCTCAATCCGGCCGTCACCATCTCCTTTGCTGCACTGAAGCACTTCCCATGGAAACATGTTCCAGTGTACATTGGAGCACAAATAATGGCGTCAATATTTGCAGCATTTGCACTGAAGGGGATATTTCATCCCTTCATGAGTGGAGGAGTCACTGTTCCTTCAGTAGGATATGGCCAAGCCTTTGCTTTGGAGTTCATCATCAGTTTTAACCTCATGTTCGTCGTCACTGCAGTAGCCACCGACACAAGAGCCGTTGGAGAGCTTGCGGGAATCGCAGTGGGAGCCACCGTCATGCTCAACATCCTCATATCAGGGCCAGCAACAGGAGGGTCAATGAACCCAGTGAGAACACTAGGGCCAGCAATAGCAGCAAATAACTACAAAGGCATATGGTTGTATGTGATAGCTCCCATACTTGGAGCTCTGAGTGGAGCAGGCACTTACACTTTAGTGAAGCTCACTGATGAACAAGAAGAAGAGGCCAAAGCAACAACTACTTCTGCCCCTGGTAGCTTCAGAAGATGA 918 0.4978 MDNEEIPSAPTTPGTPGGPLFGGFKSDQRTNGYGKKKSLLKSCKCFSVEEWNVEEGALPTVSCSLPPPPIPLARKVGAEFVGTLILMFAGTAAAIVNQETQGAETLIGCAATTGLTVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPVYIGAQIMASIFAAFALKGIFHPFMSGGVTVPSVGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILISGPATGGSMNPVRTLGPAIAANNYKGIWLYVIAPILGALSGAGTYTLVKLTDEQEEEAKATTTSAPGSFRR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0870 305 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Lele39g0870 305 Gene3D Glycerol uptake facilitator protein. 69 297 IPR023271 -
Lele39g0870 305 Pfam Major intrinsic protein 73 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 FunFam Aquaporin NIP2-1 62 294 - -
Lele39g0870 305 SUPERFAMILY Aquaporin-like 71 288 IPR023271 -
Lele39g0870 305 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele39g0870 305 MobiDBLite consensus disorder prediction 1 25 - -
Lele39g0870 305 PANTHER AQUAPORIN NIP2-1 38 289 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0870 Lele-ChrLele39 17609422 17612417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0870 1 305 Major Intrinsic Protein MIP AT1G80760 76.206 1.33e-165 460