Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0867 ATGTTCAATTCCTGCTACAATTCATACAACCAGAGGGATACATTTGTGAGGTTGGATGATTTTGATTCTAACAATTCAGTGCAATCCAATCCAAGTGGAATCATGAAGAAGCTCATATTTAACATAGAAGGTAAGCCACTTGCTGCGCGAGAAAACAGGAATGCATCAAAATCATTTAGGATGGGAATGAAGAAAGGATCAGATGGACTAAAAACATTTGGAAGATCATTGAAAAGTGGAGTCACATGGCAAGTTTTCCCAGAAGATCTTAAAGTATCAGAGACTAAAATATTTGATCCTCAAGACAAGACCCTTTTGCTATGGAATAAGTTCTTTGAGCTTCTTTGTATTATTTCAGTTTCATGTGATCCTCTTTTCTTCTATCTTCCTTACTTCAACCTCAGATCTCACTGCCTTGCCATTGATACTAAGCTTGCTTCCACTGCTATTATTCTGAGATCAATACTTGACACTATCTATCTCATCCGCATGGGTTTCCAATTCCGGACTGCTTTTATCGCCCCGTCCTCTCGGGTTTTCGGGCGAGGCGAACTCGTCATTGATCCTAAAAAGATTGCCAAAAGATACCTTGGGCGTTACTTTTTTGTTGATTTCAGTTCTGTGCTGCCATTGCCACAGATTGTGGTGGCCAACTATCTCCGGAAAGCAAAAAGTTTAGAGGTGTTAGCCACAAAAACAACACTATTGAGAGTAGTGATCCTGCAATATATTCCAAGATTTGCACGCTTTATCCCTTTAGCTACAGAAGTTAAGAAGACAGCTGCTGTTTTTTCTGAAAATGCATTCGTTGGTGCCACCTACTATTTGGTTTGGTACATGCTTGTTAGCCATATAGTTGGGTCTGTGTGGTACTTACTAGCAATTGAAAGAAGTGACACATGCTGGCAGAATGCTTGTGCTGCTGCAGCTTCTCAAGGATGCATTCCACATTTCTTGTACTGTGAGAGTTCCAATAGGCGCCATCCCGGATATGAAGCCTGGAAAACTGTCAATGGCGATATTCTTGACAGGAACTGTGGAGCTGGAGGTGACGACACTCCATTTGATTATGGAATATACACTCGAGTTGTAGAGAAGGGTATTACTGCCTCCAGTGATATGTGGAGTAAATTCTTTCTCTGTTTCTGGTGGGGTCTCCAAAATGTGAGCACACTTGGGCAGGGGCTTGACACCAGTACTTACATTGGGGAGGCTTGTTTTTCCATTTTTATATGTATTTTGGGGCTTGTCCTTATGGCTCTTCTGATTGGAAAAGTGCAGAACTACCTTCAATCAATAACCGTTCGTCTTGAGGAAATGAGGATAAAAAGGCGTGATTCTGAGCAGTGGATGCATCACCGAGTGCTTCCTCAAGAGCTGAGGGAAAGAGTGAGACGCTATGATCAATACAAATGGATGGAAACTCGAGGTGTCGACGAAGAGACCTTGGTCCAGAGTCTTCCAAAAGATCTCAGGAGGGATATCAAACGCCATCTTTGCTTGAATCTGGTCAGAAGGGTTCCTCTCTTTGCTAATATGGACGAACGCTTGCTGGATGCTATATGTGAGCGTTTGAAGCCAAGTTTGTACACAGAGGGAACATACATTGTTAGGGAAGGAGATCCAGTAGTTGAGATGTTCTTCATAATACGTGGTCGTTTAGAGAGTGTGACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGACTTCTCAAAGAAGGTGATTTCTGTGGAGAAGAGCTTCTCACATGGGCGTTAGACCCTAAATCTGCAGCAAACTTGCCATCATCAACAAGAACAGTGAAAGCTATGAATGAAGTTGAAGCATTTGCTTTAGAAGCTGAGATGTTGAAGTTTGTTGCTTCACAGTTCAGACGCCTCCATAGCAGACAAGTTCAACAGACCTTTCGGTTCTACTCGCAGCAATGGAGAACATGGGCAGCGACTTTCATTCAGGCTGCGTGGCGCCGGTATACGAAAAGGAAGATGATAGAGGCGATGCTGATAGAGGAGGAGGAGGAGGAAGAAGATTATGGTTCTGATGATGATGGAAAAGCCTTGATTTCAAGAACTGAAAGTTCATCAAGGACTGGACTTGGTTCAGCCATTTATGCTTCTCGCTTTGCTGCTAAAGCTCTTCATGGTCGTAAGCTTCGTTTGCTCCAAAAGCCTCCAGAACCTGACTTCAGCGTTTATGATCATTAG 2208 0.4293 MFNSCYNSYNQRDTFVRLDDFDSNNSVQSNPSGIMKKLIFNIEGKPLAARENRNASKSFRMGMKKGSDGLKTFGRSLKSGVTWQVFPEDLKVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLRSHCLAIDTKLASTAIILRSILDTIYLIRMGFQFRTAFIAPSSRVFGRGELVIDPKKIAKRYLGRYFFVDFSSVLPLPQIVVANYLRKAKSLEVLATKTTLLRVVILQYIPRFARFIPLATEVKKTAAVFSENAFVGATYYLVWYMLVSHIVGSVWYLLAIERSDTCWQNACAAAASQGCIPHFLYCESSNRRHPGYEAWKTVNGDILDRNCGAGGDDTPFDYGIYTRVVEKGITASSDMWSKFFLCFWWGLQNVSTLGQGLDTSTYIGEACFSIFICILGLVLMALLIGKVQNYLQSITVRLEEMRIKRRDSEQWMHHRVLPQELRERVRRYDQYKWMETRGVDEETLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVVEMFFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMNEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYTKRKMIEAMLIEEEEEEEDYGSDDDGKALISRTESSSRTGLGSAIYASRFAAKALHGRKLRLLQKPPEPDFSVYDH 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0867 735 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
Lele39g0867 735 Gene3D Jelly Rolls 507 627 IPR014710 -
Lele39g0867 735 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Lele39g0867 735 SMART cnmp_10 509 640 IPR000595 -
Lele39g0867 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 88 730 - -
Lele39g0867 735 Pfam Cyclic nucleotide-binding domain 530 618 IPR000595 -
Lele39g0867 735 Gene3D - 114 435 - -
Lele39g0867 735 MobiDBLite consensus disorder prediction 674 698 - -
Lele39g0867 735 Pfam Ion transport protein 107 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele39g0867 735 CDD CAP_ED 509 640 IPR000595 -
Lele39g0867 735 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
Lele39g0867 735 SUPERFAMILY Voltage-gated potassium channels 100 431 - -
Lele39g0867 735 Gene3D Helix hairpin bin 436 500 - -
Lele39g0867 735 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Lele39g0867 735 ProSiteProfiles cAMP/cGMP binding motif profile. 509 592 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0867 Lele-ChrLele39 17580060 17585414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0867 1 730 Ion Channels AT1G15990 65.374 0.0 946