Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0858 ATGGCCACTCCCTCATCCCAAGTGGTGAAGCTGTCGTCGTCGTTGGCCCTCATCTTCTTCGTCCTTGCTTCCCTCTCCGCCGTCTCCGCCACCGACCACATCGTTGGTGCCAACCAGGGCTGGAACCCCGGCATTAACTACACTCTCTGGGCCAACAACCAGACTTTCTATGTCGGCGACCTCATCTCATTCAGGTACGTGAAAAACCAGTACAATGTGTTTGAGGTGAACCAAACTGAGTATGACAACTGCACTACAGAGGGGGCTATTGGGAATTGGACAAAAGGCAAAGATTTCATACCACTGAATGAGGCTAAGAGGTATTACTTCATTGGTGGCAATGGCCAATGCTTCAATGGCATGAAAGTCTCTGTTCTTGTTCATCCTCTTCCTCCTCCTCCTTCTTCTGCTGTTGCTGCTAAGCATGAAAACCCATCCTCTGCTGCTGCTGCTCCAATGCTTTTGTCTGGGGGATTCTGGTTTTCTATGCTCATGTCTTCTTCTGCTTTGGTTTGGTTTGGATGTGGTTGGATCTAG 537 0.4953 MATPSSQVVKLSSSLALIFFVLASLSAVSATDHIVGANQGWNPGINYTLWANNQTFYVGDLISFRYVKNQYNVFEVNQTEYDNCTTEGAIGNWTKGKDFIPLNEAKRYYFIGGNGQCFNGMKVSVLVHPLPPPPSSAVAAKHENPSSAAAAPMLLSGGFWFSMLMSSSALVWFGCGWI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0858 178 PANTHER BLUE COPPER PROTEIN 28 140 IPR039391 GO:0009055
Lele39g0858 178 ProSiteProfiles Phytocyanin domain profile. 31 129 IPR003245 GO:0009055
Lele39g0858 178 SUPERFAMILY Cupredoxins 30 128 IPR008972 -
Lele39g0858 178 Gene3D - 29 130 IPR008972 -
Lele39g0858 178 FunFam Lamin-like protein 29 130 - -
Lele39g0858 178 Pfam Plastocyanin-like domain 41 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0858 Lele-ChrLele39 17522135 17523250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0858 11 137 Phytocyanin Superfamily AT5G15350 45.736 1.93e-41 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0572 37 4723570 4724716 Lele39g0858 39 17522135 17523250 hybridization
Lele38g0540 38 4510278 4511427 Lele39g0858 39 17522135 17523250 hybridization