Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0848 ATGACTGAAGCTTGCAAAAAATCCTCCATTTTTGGTCAGCCATATAATTCTCTCTACGTCAATCCTCTCATTGAACTCAGGCACAGTCGTAGCTGCAGCGACAGTAGCAGCTTAGCTTCAAAATGTCACAAATGTGAAGATTTCACGAACAGAGAAGTTTCAACTGATAATAAAGAGAATGTCGTCACGCCCAGGAAGAAGAAAGATGTTGTAACTCGCTTTTGTGACAAGGAAAATACAATGCCTGCAAATGGGTTGTCATCTTCTTCTTTGCCTAATAAACACTTCTCAAAATCCATGTCTTTGTCCACAGCTAGGATTTTTAAGCCAAACTCGCTTCAGTTCTGCATGCAAATGAACGAGCCTGAAAAAGCTTTTGGCCTTGGTTACAAGGTATGGGATAATGTATTTTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCCAATAAGTCTTTGATATGTAGACCGTTGCCTGTAGATATTGGAAGGTGTACATGCATCATTGTAAAGGAAGCAAAACCAGAAGAACTATCTGGGGGCACTATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGAGGAATGGGAGATCTCAGTTCATTATAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAACCTCCTGGGTTCTAAATACCAAATATGGGATGAGGGATATCGTCATAATTCACATGATAAACAGCTAAAACCACCTCTTGCTGTTGTGATGTTTATCCCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTGCCCAAGCATCAATCTATGTCACTAAAGAACATAACCCAGGTTTTACGATATCTTACTTTGTACTATGTACAACATATCAAAGGACTGCCCATAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATTCAAAGATCAGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATCGGGAAATCAAAATTTGTTATGGATTACAGGTATCCTTTGACAGGTTACCAGGCGTTCTGCTTGAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTTTGTGTAG 1296 0.4028 MTEACKKSSIFGQPYNSLYVNPLIELRHSRSCSDSSSLASKCHKCEDFTNREVSTDNKENVVTPRKKKDVVTRFCDKENTMPANGLSSSSLPNKHFSKSMSLSTARIFKPNSLQFCMQMNEPEKAFGLGYKVWDNVFSENLSSLKIWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCIIVKEAKPEELSGGTMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIIAQNVKGLLSNSDDSFLGTVTANLLGSKYQIWDEGYRHNSHDKQLKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVLRYLTLYYVQHIKGLPIDWEGKLDKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCFV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0848 431 PANTHER TUBBY-RELATED 89 428 - -
Lele39g0848 431 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lele39g0848 431 PRINTS Tubby superfamily signature 245 269 IPR000007 -
Lele39g0848 431 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lele39g0848 431 PRINTS Tubby superfamily signature 367 383 IPR000007 -
Lele39g0848 431 Gene3D Tubby Protein; Chain A 162 430 IPR025659 -
Lele39g0848 431 SUPERFAMILY Tubby C-terminal domain-like 157 429 IPR025659 -
Lele39g0848 431 Pfam Tub family 171 425 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0848 Lele-ChrLele39 17465614 17468250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0848 56 315 TUB Transcription Factor Family AT1G16070 54.924 7.17e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele39g0848 Tub 2.4e-38 CL0395