Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0839 ATGGCTCAAGACCCTGCATCTGATCTTCTCTCAGCTCTGTTTCCCGAAAATGAAGAAGATGATCACGCCCCATTTACGGATGATGAATATGCCCAACGCTTGCAGTTTCAGGAGATCCTTTACTCCTCTTTTGTCGCTTCCAAAAGGGAAAAAAATGATCCATCATCATCATCTTCTTCTTCTTCTTTACTGATTTTAAGTTCATCGTCATCATCTTCTGCTCCTTTAAAAGTGGTTGACACTTGCCCTTCCCCAAAAACACAGGACGTGGAACACTCCAATGAAACGTGTGAATCTTGGCCAGTCATCTGCGAAATATGTGCAGAAACTAAAGATACTTCCGAGATGTTCAGAAATCAGAGATGCAACCACTCGTTTTGTTCCGATTGTTTCACAAAACAAGTGGCAACAAAAATTCAGGAAAGCATAACAGAAGTTCCTTGTCCTGGTTTGGACTGTGAAAGTATTATTGAGCTTGATGCTTGTAGGCCATGGCTTCCCAAGGATTTGCTTCATAGGTGGGATCAAGCTCTGTGTGAAGCTGTGTTTCTGGCAGCCCCTAAATTTTACTGCCCCTTTAAGGATTGTTCAGCTATGATGCTGGCTGATAATGAAGAAGAAGGAGAAGAGCATCAACCTATAAGGGAAGCAGAGTGTCCCGTTTGCCACAGACTGTTCTGTGCAAATTGTTATGTGCCCTGGCATCCTGGTGTTGAATGTGAGGAATTTCAGACACCGAATGAGAATGAGAGAGAGGGGCAAGATCTGATTGTGAGAGAGCTTGCTAAAGAGAAGGAATGGAGAAGGTGTCCCAATTGTAGGTTCTTTGTGGAGAAGACAGAAGGATGCTTGCACATCACTTGCAGAATCAAAGTCTGTGCCGCTGTGAGTTTTGCTATGGGTGTGGAGAGAAATGGACTTCTACTCATGGAGGCTGCCAAAGAAATTAAGAATTATATAATGTCAGCTACGAAAAGCTAA 981 0.4322 MAQDPASDLLSALFPENEEDDHAPFTDDEYAQRLQFQEILYSSFVASKREKNDPSSSSSSSSLLILSSSSSSSAPLKVVDTCPSPKTQDVEHSNETCESWPVICEICAETKDTSEMFRNQRCNHSFCSDCFTKQVATKIQESITEVPCPGLDCESIIELDACRPWLPKDLLHRWDQALCEAVFLAAPKFYCPFKDCSAMMLADNEEEGEEHQPIREAECPVCHRLFCANCYVPWHPGVECEEFQTPNENEREGQDLIVRELAKEKEWRRCPNCRFFVEKTEGCLHITCRIKVCAAVSFAMGVERNGLLLMEAAKEIKNYIMSATKS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0839 326 Gene3D - 238 296 - -
Lele39g0839 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Lele39g0839 326 MobiDBLite consensus disorder prediction 1 28 - -
Lele39g0839 326 SUPERFAMILY RING/U-box 178 245 - -
Lele39g0839 326 SUPERFAMILY RING/U-box 253 291 - -
Lele39g0839 326 Pfam IBR domain, a half RING-finger domain 188 240 IPR002867 -
Lele39g0839 326 ProSiteProfiles Zinc finger RING-type profile. 104 149 IPR001841 -
Lele39g0839 326 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 295 IPR031127 GO:0004842|GO:0016567
Lele39g0839 326 ProSiteProfiles TRIAD supradomain profile. 100 320 IPR044066 -
Lele39g0839 326 FunFam RBR-type E3 ubiquitin transferase 100 185 - -
Lele39g0839 326 SMART ibrneu5 172 240 IPR002867 -
Lele39g0839 326 SUPERFAMILY RING/U-box 102 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0839 Lele-ChrLele39 17393494 17394837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0839 104 289 C3H Transcription Factor Family AT2G19610 26.804 4.01e-17 79.7