Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0838 ATGGCCCAAGATTCTGCCTTTGATCTTCTGTACGAATTTTTTTTCTTTTCTTCTTTCTTCTTCTCTCTCGTGGCCACTGAACTTCTCTGCATTGAATTTCCATTTTTCTCAGCTCTTTTTTTCCAACATGAAGATGATCATCATGTCCCATTCACTCTTGCTCAATATCATCAACGCTCGCGGTTTCCCAAGACAAAAAATTCTTCTTCCCTCCATTTACCACCATCATCACCTTCTTCTTCTTCTTCTTGGAGTAACCCAGAAACGAAGCATGTGAAGTCTTCAATGAAAACAGAGGAACCCTTGCCGATTATCTGTGAAATATGTGCAGAAACTAAAAGAACTACCCAGATGATCAAGAACCATACATGCGACCATTCGTATTGCTCTGATTGTGTAACAAAACATGTAGCAACGAAAATTCAAGACACCATAACAGCAGTTCCATGTCCGGGTTTGGGTTGTAAAACTGTTTATAATCTCGAAGCTTGTCGGCCATGGCTTCCAAAGGACTTACTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTTCCTAAATTTTACTGTCCATTTAAGGATTGTTCAGCGATGATGTTGGTTGAGAATGAGGAAGATCAACGAGATGCAGGGGAAACAGAGTGCCCTGTTTGCCATAGGATGTTCTGTCCAAGGTGTAATGTTCCATGGCATCCTGGAATTGACTGTGGGGAATATCAGAAATTGAATGAGAATGAGAGACAGAGAGAGGATCTTCTTGTGAGAAAGCTCGCTAAAGAAAAGAAATGGGGAAGGTGCCCGAAGTGTAAGTTTTATGTGGAGAAGATACATGGATGCGTGCATATCACTTGCAGGTGTAAATATGAGTTTTGTTATGCATGTGGAGAAGAATGGAGTTCTACTCATGGAGGCTGCCAAGGAAATTAG 936 0.4156 MAQDSAFDLLYEFFFFSSFFFSLVATELLCIEFPFFSALFFQHEDDHHVPFTLAQYHQRSRFPKTKNSSSLHLPPSSPSSSSSWSNPETKHVKSSMKTEEPLPIICEICAETKRTTQMIKNHTCDHSYCSDCVTKHVATKIQDTITAVPCPGLGCKTVYNLEACRPWLPKDLLERWDQALCEALFLQVPKFYCPFKDCSAMMLVENEEDQRDAGETECPVCHRMFCPRCNVPWHPGIDCGEYQKLNENERQREDLLVRKLAKEKKWGRCPKCKFYVEKIHGCVHITCRCKYEFCYACGEEWSSTHGGCQGN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0838 311 FunFam RBR-type E3 ubiquitin transferase 103 187 - -
Lele39g0838 311 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Lele39g0838 311 Pfam IBR domain, a half RING-finger domain 257 308 IPR002867 -
Lele39g0838 311 Pfam IBR domain, a half RING-finger domain 189 239 IPR002867 -
Lele39g0838 311 ProSiteProfiles TRIAD supradomain profile. 102 311 IPR044066 -
Lele39g0838 311 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Lele39g0838 311 SUPERFAMILY RING/U-box 250 308 - -
Lele39g0838 311 Pfam Zinc finger, C3HC4 type (RING finger) 106 151 IPR018957 GO:0046872
Lele39g0838 311 SUPERFAMILY RING/U-box 104 183 - -
Lele39g0838 311 Gene3D - 236 311 - -
Lele39g0838 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 184 IPR013083 -
Lele39g0838 311 SUPERFAMILY RING/U-box 179 244 - -
Lele39g0838 311 SMART ibrneu5 249 308 IPR002867 -
Lele39g0838 311 SMART ibrneu5 174 239 IPR002867 -
Lele39g0838 311 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 302 IPR031127 GO:0004842|GO:0016567
Lele39g0838 311 MobiDBLite consensus disorder prediction 64 96 - -
Lele39g0838 311 MobiDBLite consensus disorder prediction 64 91 - -
Lele39g0838 311 FunFam RBR-type E3 ubiquitin transferase 241 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0838 Lele-ChrLele39 17388856 17390169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0838 69 298 C3H Transcription Factor Family AT2G19610 26.891 1.28e-16 78.2