Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0827 ATGTATAGGAATACAATGCGACCATTACAGCAATGTGGTCTTACTAAACCTCACTGTATACTAGGAACAATACCACCAGAGTTAGGCAATTGCAGTCTGCTTGAGTATATTGATCTTTCTGATAACTGCTTTAATGGACACATACCATATACTTTGAAAACGTTTGAACATTTAAGGCATTGGTTCCATCCCATCAATATTGGGAACACAACTGAATTGTTGAAGCTGCCTCTCTCTAGCAATCAGTTGTCAGGAACCATTCCCTCTTCCATAGGTAACTGCAGCAAACTAGAGGCAGTATTTGTGAATGACAACATATTGACAGGAATTTTGCCTCAGTCTGAGCAATCTAAAGAATCTTGAACAATTCCAAATGAATTGGGAGGATTGAGTAAATTGGAGGACCTTGAACTGTACTCCAACCATTTAACGGGTGAAATTCCACTTACCATTTGGATGATTCAAAATCTTAAGCATGTCCTTCTTCATAACAATAGCCTTTTAGGGAAATTACCTTCAGAGATGACAGAGCTCAAGCATCTGAAAAATATCTCATTGTTCGACGACCAATTCTCTGGATCAATTCCTCAAAACTTGGGAATCAATAGCAGTTTAGTGAAGCTAGACTTGAGGCTTACCGGTAACATCCCACCAAATCTTTGTTATGGAAAGCAATTACGCCTACTGAATTTAGGTCTTAATCAACTTCAAGGGCGCATATCTCATGATGTGGGAAGATGCATATCTCATTATGTGAGTTTAAAGGGTCCTTTGCCTCAGCAACTGTCATACTGCACCAAAATGAAAACCTTTGATTTGGGATTCAATTTCCTTAATGGTTCATTCCCATCAAGCATGAGGAGGTGGACAGAATATGATCAATTACTTGAGCTGCAACTTGATGGAAATATGTTTGGAGGAAAAATTCCTACATCAATTGGATCATTGCAGAATCTTTTAAATGGTTTGAATCTGAGTGCTAATAAATTAACTGGAATACTACTAATTTATGACCATCATTCCAGACAAAGATCTAAGGAGGAGGTCCTTGCTTATCCTACATGGAATGTCCGCTATAAGATTGCTATTGGAATTTCCATTGTTTTTAATATACTCCTTGATTCTGATATGCAACCTTGTATTACTGATTTTGGTATTTCCATTGTTTTGAATCAACCCTCTACTACAATGCATATGCGGTCCACATATTATCTTGGTACACATGGGTTTATGGCACCGGGGCCAAGCTGCGATCTTGATATATATAGTTACGGTGTAGTTTTGCTAGAGCTGATAACTAGAAAGAAAGTATTAGATTCCTCATTCATGGTGGAGGAAACCACGTTAGTTGGGTGGTTTAAATCTGTATGGAGGACAACAAGAGAACTTGAAGAGATTGTTGATTCAAGCATTGCAAGGGAGCTTTCAGATTTAAATGTAATGGTGCAAGTTATCAAAGTGATTATGGTGTCTTTGATATGTACTGAGACAGATCCAGGAAAGAGACTGAAGATGAGAGTCGTTGTGGAATTCTTTGAAACATCCACAGATCCAGGAATTTTTGTTCCACATTATGGAACGGGAGTTCTCTTGCTACTGCCCCAGCCTCAATGTTTTTCCAGAGCAAAAACTCGAGATGATAAGGCCTTGCAAGATACAAATCATTATAGGCCTGAGCATGAAATGTGTGAGGAGGAAGCCATGATCCCTACCCGTAGAGGTCCTGACCTAGTTTATGCTGTAAAGAAGCTTACGTTTGCAGGGAACAAAGGGAAGGTCCAAAGCATAGTTAGAGAGATCAAAATCCTGATAAAGATTAGGCATAGAAATCTTGTTGGATTACTAGATTTTTTTTTCACAGAGGACTACGGTATAATTTTATACAGTTACATACCAAATGGAAACCTTCATGATGTTTTGCACGAAATGAATCCACCACCTCTTGCCAAGCTTTTGGATCAACTTCTTCTTCTTCGAGACCATCTTCATCAGTTCCAGGAGGTTTTGAATCCAAATGTTCTTAGACGAGTTATCAATGTGATTTTGGTAGCTCTACGTTGCCCTGAGGAGGATCCAGACATGAGACCGACAATGAGAGATGTTATCAACCAATTGGAAGATGCTTTTGGCTAA 2133 0.3887 MYRNTMRPLQQCGLTKPHCILGTIPPELGNCSLLEYIDLSDNCFNGHIPYTLKTFEHLRHWFHPINIGNTTELLKLPLSSNQLSGTIPSSIGNCSKLEAVFVNDNILTGILPQSEQSKESXTIPNELGGLSKLEDLELYSNHLTGEIPLTIWMIQNLKHVLLHNNSLLGKLPSEMTELKHLKNISLFDDQFSGSIPQNLGINSSLVKLDLRLTGNIPPNLCYGKQLRLLNLGLNQLQGRISHDVGRCISHYVSLKGPLPQQLSYCTKMKTFDLGFNFLNGSFPSSMRRWTEYDQLLELQLDGNMFGGKIPTSIGSLQNLLNGLNLSANKLTGILLIYDHHSRQRSKEEVLAYPTWNVRYKIAIGISIVFNILLDSDMQPCITDFGISIVLNQPSTTMHMRSTYYLGTHGFMAPGPSCDLDIYSYGVVLLELITRKKVLDSSFMVEETTLVGWFKSVWRTTRELEEIVDSSIARELSDLNVMVQVIKVIMVSLICTETDPGKRLKMRVVVEFFETSTDPGIFVPHYGTGVLLLLPQPQCFSRAKTRDDKALQDTNHYRPEHEMCEEEAMIPTRRGPDLVYAVKKLTFAGNKGKVQSIVREIKILIKIRHRNLVGLLDFFFTEDYGIILYSYIPNGNLHDVLHEMNPPPLAKLLDQLLLLRDHLHQFQEVLNPNVLRRVINVILVALRCPEEDPDMRPTMRDVINQLEDAFG 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0827 710 Pfam Protein tyrosine and serine/threonine kinase 576 646 IPR001245 GO:0004672|GO:0006468
Lele39g0827 710 CDD PKc 571 647 - -
Lele39g0827 710 SUPERFAMILY RNI-like 22 332 - -
Lele39g0827 710 Gene3D Ribonuclease Inhibitor 8 61 IPR032675 -
Lele39g0827 710 Gene3D Ribonuclease Inhibitor 62 118 IPR032675 -
Lele39g0827 710 Gene3D Ribonuclease Inhibitor 250 341 IPR032675 -
Lele39g0827 710 Pfam Protein kinase domain 370 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0827 710 Gene3D Transferase(Phosphotransferase) domain 1 568 676 - -
Lele39g0827 710 Gene3D Transferase(Phosphotransferase) domain 1 368 518 - -
Lele39g0827 710 ProSiteProfiles Protein kinase domain profile. 442 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0827 710 Gene3D Ribonuclease Inhibitor 119 249 IPR032675 -
Lele39g0827 710 SUPERFAMILY Protein kinase-like (PK-like) 574 685 IPR011009 -
Lele39g0827 710 SUPERFAMILY Protein kinase-like (PK-like) 370 512 IPR011009 -
Lele39g0827 710 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 353 513 - -
Lele39g0827 710 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 115 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0827 Lele-ChrLele39 17289003 17294164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0827 579 644 Receptor kinase-like Gene Family AT1G17750 50.000 1.57e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele39g0827 PK_Tyr_Ser-Thr 8.1e-07 CL0016