Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele39g0812 | ATGACCTCCACATCTCGAGGTTCCAACGCCGGTGCTTCCGATAATAATGGCTTTATCACCGTCACCTTCGCCGCGCATCCGGATGGCGAACCTCCTTCCACCTCCGCCGCCCACCGCATTGATGTCGATGATCATGACAATGACTCGCCGGTGGATCCAGAAGATCCTTTCGACATTGCTCAAACAAAAAATGCGCCTCGGGAGGCCCTCCAGCGATGGAGACAAGCAGCAATAGTGCTCAATGCCTCGCGGCGTTTTCGTTACACTCTGGACTTGAAAAAAGAGGAAGAGAAACAACAAAAGAAAAACTTGATTAGAGCCCACGCACAAGTCATAAGAGCAGCATTGCTTTTCAAATTGGCCGGTGAACGTGAAATAGTTGTAACTACACCAGCGCTATCCCCAGCTCGAATCAGTGTCGGTGATTTTGCAGTTGGACTTGAAAAGCTTGTCTCAATGTCTAAGGATCATGACATTTCTGCTTTGGAGCAATATGGAGGGGTTAAAGGTTTATCGAATTTACTAAAATCAAGTCCCGAGAAAGGGATTAATGGTAGTAATGATGATCTACTAAGAAGGAGGAGCTCATTTGGAACAAATACGTATCCTCGGAAAAAGGGGAGGAGTTTCTTTAGGTTTCTATGGGAAGCTTGGCAAGATCTGACCCTAATCATATTGATTATAGCAGCTGCAGTGTCATTAGTACTTGGAATAAAAACAGAGGGTGTGAAAGAAGGGTGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTTCTTGTTATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATACAGAAAAACAAAATATACAACTAGAGGTCATAAGAGGTGGTAGAACAGTAAAGATATCAATTTTTGATGTTGTTGTTGGTGATGTTGTGCCTCTTAAAATAGGAGATCAGGTTCCTGCTGATGGACTTTTAATCACTGGCCACTCATTTGCAATTGATGAATCCAGCATGACTGGTGAAAGCAAAATTGTTCACAAAGACCATAAAGCACCATTTTTGATGTCTGGCTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACTGGTGTTGGTATCAATACTGAGTGGGGACTGTTGATGGCAAGTATCTCGGAGGATACTGGAGAAGAGACTCCTTTACAGGTACGTTTGAATGGAGTAGCGACTTTCATTGGTATAGTAGGGCTTTCAGTAGCTGTTATTGTGTTGGCGGTTCTCTTGGGAAGATACTTTTCTGGGAACACAAGGGATCTAAAAGGCAATGTTGAGTTTGTCGGTGGAAAGACTAGTCTAAGTCATGCAGTAGATGGGGTCATTAAAATTTTTACCATAGCTGTCACAATCGTGGTTGTTGCAGTTCCTGAAGGTCTTCCCTTGGCTGTTACCTTAACCCTTGCTTACTCGATGCGAAAGATGATGGAAGACAAAGCCTTGGTACGGAGGCTCTCAGCCTGTGAAACTATGGGTTCTGCTACAACAATTTGCAGTGATAAGACAGGAACGTTGACATTGAATGAGATGACTGTTGTTGAGGCATATGTTGGGAAGAAGAATATAAACCTGCCAGGTGACTTACCAAATTTGCACCCAGAAGTTATATCTCTAATAAATGAGGGCGTTGCACAGAATACTAGTGGAAATGTTTTTGAGCTCAAGGGTGGTGGAGAAATAGAGATTTCGGGATCTCCTACAGAAAAGGCAATCCTCTCTTGGGCTGTCAAGTTGGGAATGAAATTCGATCTTACCAAATCAAATTCAACAATTCTACATGTCTTTCCCTTCAACTCTGAGAAAAAGCGAGGGGGTGTTGCGCTGAAGCTGGCGGACACTGGTGTACACATTCATTGGAAAGGAGCTGCGGAGATAGTTCTAGGTTCATGTACCCAATATCTTGATTCAAATGGTCAATTGCAATCTATTGATGGAGAGGACTTTTTCAAGGAGGCTATTGATAACATGGCTGCTCGCAGCTTGCGGTGTGTCGCCATTGCATATAGATCATATGAAACGAACAAAGTTCCCTCTAATGAGGAGGATTTGGCCAAGTGGTTATTGCCCGAGCACGAACTTGTTTTGCTTGCTATTGTTGGTATAAAGGATCCCTGTCGCCCTGGAGTCAAAGATGCTGTCAAAGTATGTACTAAAGCTGGGGTTAAGGTACGCATGGTTACTGGAGACAACATTCAGACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTTTCTTCAAATGAAGATCTTGCTGAGCCAACTGTAATTGACGGAAAGACATTCCGTTCATTATCTGAAAACGAAAGGGAACATGTTGCTAAACGAATAACTATTATGGGGAGATCTTCTCCGAGTGACAAGCTTTTGCTTGTGCAAGCACTGCGTAAGGGAGGGGAAGTTGTTGCTGTCACAGGAGATGGTACTAACGATGCACCTGCACTTCATGAGGCAGATATTGGTCTTTCCATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATCATAATTCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTCCGATGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTTGTTATAAATGTTGTGGCTGCAATATCTTCTGGTGATGTCCCTTTAAATGCAGTGCAGCTTTTGTGGGTCAACCTTATCATGGACACACTCGGGGCTCTTGCATTGGCCACTGAACCACCAACGGACCATCTTATGCACAGATCACCAGTTGGCAGAAGGGAATCTCTTGTAACAAATGTCATGTGGAGGAACTTGGCCGTACAGGCCATATATCAAGTTACTGTTCTACTTGTTCTGAACTTCGCCGGGGATGAAATTCTACAAATGAATTACTCTCGAGCTCATACACATCAACTGAAGAATACTTTGATATTCAATGCATTTGTCCTCTGCCAAATATTCAATGAGTTCAACGCTCGGAAACCAGACGAAATGAATGTCTTCCGGGGAGTGACTAAGAACCACCTCTTCATGGGAATTGTTGCAATTACCTTTGTACTTCAGATTATCATCATTGAGTTCCTTGGAAAGTTCACATCAACCGTGAGGCTTGATTGGAAGATGTGGCTTGTTTCTCTTGCTATAGGGCTGTTCAGCTGGCCTCTAGCTGTAGTTGGCAAATTAATTCCAGTTTCAAAAACACCAGTTTCACGGTACTTTCTGAAGCCATGGAGGCGCTGGAAGCATCGTGCTTTGTTATAA | 3300 | 0.4339 | MTSTSRGSNAGASDNNGFITVTFAAHPDGEPPSTSAAHRIDVDDHDNDSPVDPEDPFDIAQTKNAPREALQRWRQAAIVLNASRRFRYTLDLKKEEEKQQKKNLIRAHAQVIRAALLFKLAGEREIVVTTPALSPARISVGDFAVGLEKLVSMSKDHDISALEQYGGVKGLSNLLKSSPEKGINGSNDDLLRRRSSFGTNTYPRKKGRSFFRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGVKEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFQNLNTEKQNIQLEVIRGGRTVKISIFDVVVGDVVPLKIGDQVPADGLLITGHSFAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVIVLAVLLGRYFSGNTRDLKGNVEFVGGKTSLSHAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMEDKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAYVGKKNINLPGDLPNLHPEVISLINEGVAQNTSGNVFELKGGGEIEISGSPTEKAILSWAVKLGMKFDLTKSNSTILHVFPFNSEKKRGGVALKLADTGVHIHWKGAAEIVLGSCTQYLDSNGQLQSIDGEDFFKEAIDNMAARSLRCVAIAYRSYETNKVPSNEEDLAKWLLPEHELVLLAIVGIKDPCRPGVKDAVKVCTKAGVKVRMVTGDNIQTAKAIALECGILSSNEDLAEPTVIDGKTFRSLSENEREHVAKRITIMGRSSPSDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRRESLVTNVMWRNLAVQAIYQVTVLLVLNFAGDEILQMNYSRAHTHQLKNTLIFNAFVLCQIFNEFNARKPDEMNVFRGVTKNHLFMGIVAITFVLQIIIIEFLGKFTSTVRLDWKMWLVSLAIGLFSWPLAVVGKLIPVSKTPVSRYFLKPWRRWKHRALL | 1099 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele39g0812 | 1099 | PANTHER | CATION TRANSPORTING ATPASE | 103 | 1077 | - | - | |
| Lele39g0812 | 1099 | SFLD | p-type atpase | 490 | 866 | IPR044492 | - | |
| Lele39g0812 | 1099 | Gene3D | - | 518 | 714 | IPR023299 | GO:0000166 | |
| Lele39g0812 | 1099 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 515 | 711 | IPR023299 | GO:0000166 | |
| Lele39g0812 | 1099 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 510 | 516 | IPR018303 | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 707 | 859 | - | - | |
| Lele39g0812 | 1099 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 446 | 530 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele39g0812 | 1099 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 780 | 894 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele39g0812 | 1099 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 156 | 1077 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Lele39g0812 | 1099 | Pfam | Cation transporting ATPase, C-terminus | 899 | 1075 | IPR006068 | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 707 | 718 | - | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 332 | 346 | - | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 508 | 522 | - | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 729 | 739 | - | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 814 | 833 | - | - | |
| Lele39g0812 | 1099 | PRINTS | P-type cation-transporting ATPase superfamily signature | 838 | 850 | - | - | |
| Lele39g0812 | 1099 | Gene3D | - | 187 | 384 | - | - | |
| Lele39g0812 | 1099 | Pfam | E1-E2 ATPase | 285 | 486 | - | - | |
| Lele39g0812 | 1099 | Gene3D | - | 67 | 120 | - | - | |
| Lele39g0812 | 1099 | SUPERFAMILY | HAD-like | 506 | 919 | IPR036412 | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 831 | 1079 | - | - | |
| Lele39g0812 | 1099 | SMART | Cation_ATPase_N_a_2 | 164 | 238 | IPR004014 | - | |
| Lele39g0812 | 1099 | PRINTS | Sodium/potassium-transporting ATPase signature | 627 | 645 | - | - | |
| Lele39g0812 | 1099 | PRINTS | Sodium/potassium-transporting ATPase signature | 251 | 271 | - | - | |
| Lele39g0812 | 1099 | PRINTS | Sodium/potassium-transporting ATPase signature | 501 | 522 | - | - | |
| Lele39g0812 | 1099 | SUPERFAMILY | Calcium ATPase, transduction domain A | 286 | 381 | IPR008250 | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 362 | 532 | - | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 65 | 121 | - | - | |
| Lele39g0812 | 1099 | CDD | P-type_ATPase_Ca_PMCA-like | 190 | 947 | - | - | |
| Lele39g0812 | 1099 | Pfam | Cation transporter/ATPase, N-terminus | 165 | 233 | IPR004014 | - | |
| Lele39g0812 | 1099 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 55 | 97 | IPR024750 | GO:0005516 | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 263 | 384 | - | - | |
| Lele39g0812 | 1099 | Gene3D | - | 505 | 859 | IPR023214 | - | |
| Lele39g0812 | 1099 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 165 | 1078 | IPR023298 | - | |
| Lele39g0812 | 1099 | SFLD | Haloacid Dehalogenase | 490 | 866 | - | - | |
| Lele39g0812 | 1099 | MobiDBLite | consensus disorder prediction | 21 | 59 | - | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 518 | 714 | - | - | |
| Lele39g0812 | 1099 | Pfam | haloacid dehalogenase-like hydrolase | 505 | 828 | - | - | |
| Lele39g0812 | 1099 | Gene3D | - | 216 | 1066 | - | - | |
| Lele39g0812 | 1099 | FunFam | Calcium-transporting ATPase | 216 | 273 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele39g0812 | Lele-ChrLele39 | 17172505 | 17190936 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele39g0812 | 13 | 1094 | Primary Pumps ATPases | AT3G21180 | 74.149 | 0.0 | 1616 |