Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0796 ATGAGGTCAAGAAAAAGCATCATATATTTGCCAATCCCAGTTTCACGTTCTCCCTCCTTCTCCCTGAGTCGTGTCTCTCTGTCTCACTCAAACTTCATCTCTCTGTCTCTCCTTTTGAGTATTGATCCAAACACGAGAATTTTGGATTTGATCTGTTCTTTCTGGTGCAACACCACAGATCTTCAATTCAATTCCAGATTCAACGCTCTCTACTTGATTTTCTGGTGTCCGATCTGTGATATCTGCTTCAGAATGCCGGCTGTTTACGGAGCTCGCTTGACAACCTTCGAAGATTCCGAGAAGGAGAGCGAATATGGTTACGTTCGTAAAGTATCAGGACCAGTCGTGGTTGCAGATGGTATGGCTGGGGCTGCTATGTATGAACTAGTGCGTGTTGGTCGGGATAATCTTATTGGTGAAATTATTCGCTTAGAAGGGGATTCTGCTACTATCCAAGTTTATGAGGAAACGGCAGGCTTAATGGTAAATGATCCTGTCCTACGGACACACAAGCCTTTATCAGTGGAGCTGGGGCCTGGAATATTGGGAAATATTTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTCTACATTCCTCGTGGTGTCTCTGTTCCAGCACTTGATAAAGATACACTTTGGGAGTTTCAGCCTAAAAAAATTGGTGAAGGGGACCTTTTGACTGGTGGAGATTTATACGCTACGGTTTTTGAGAACAGTTTAATGCAACACCACATTGCACTTCCTCCTGATGCAATGGGAAAAATAACATACATTGCACCACCTGGTCAATATTCCCTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAACAGTTCACAATGCTTCAGACATGGCCTGTACGTACTCCGAGGCCTGTTGCATCAAAACTAGCAGCTGACACTCCTCTTCTTACGGGTCAGCGTGTTCTTGATGCCCTCTTCCCTTCTGTTCTTGGTGGGACTTGTGCAATACCTGGAGCCTTTGGTTGCGGTAAAACTGTCATTAGTCAGGCTCTTTCAAAGTATTCCAACTCTGATTCTGTTGTTTATGTTGGTTGCGGGGAACGTGGAAATGAAATGGCAGAGGTCTTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGAGAAGAATCTGTCATGAAGCGAACAACGCTGGTGGCCAACACTTCAAACATGCCTGTGGCTGCTCGTGAGGCTTCAATTTATACAGGAATCACTCTAGCTGAGTATTTTAGAGATATGGGTTACAATGTCAGCATGATGGCAGATTCTACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTTGCTGCCCGTTTAGCTTCTTTCTATGAACGTGCTGGAAAAGTCAAATGCCTTGGGGGGCCCGAACGTACTGGTAGTGTCACAATTGTTGGTGCTGTTTCTCCACCAGGAGGAGATTTCTCTGATCCTGTGACATCTGCAACTCTTAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCCTATTCGAAGTACGCAGGTGCATTGGAATCCTTCTATGAGCAATTTGATCCAGATTTCATAAACATTAGGACAAAGGCTCGCGAAGTGCTGCAGAGAGAAGATGACCTCAATGAAATTGTCCAGCTTGTAGGCAAGGACGCTTTAGCTGAAGGAGACAAGATCACATTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAGAATGCTTTTACTGCATATGACAAATTCTGCCCCTTCTATAAATCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCGAATCAGGCAGTAGAGAGGGGAGCTGGTACGGATGGTCAAAAGATAACTTACACCCTCATCAAGCATCGTTTGGGAGATCTCTTCTACCGTTTAGTGTCACAGAAATTTGAGGATCCAGCAGAAGGTGAAGCAGCGCTGGTTGACAAATTTAAGAAGCTTCATGAGGACCTGACCAATGGTTTCCGCAATCTTGAGGATGAAACCCGATAG 2124 0.444 MRSRKSIIYLPIPVSRSPSFSLSRVSLSHSNFISLSLLLSIDPNTRILDLICSFWCNTTDLQFNSRFNALYLIFWCPICDICFRMPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDSVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYAGALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTAYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVDKFKKLHEDLTNGFRNLEDETR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0796 707 FunFam V-type proton ATPase catalytic subunit A 278 541 - -
Lele39g0796 707 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 316 542 IPR000194 GO:0005524
Lele39g0796 707 Gene3D - 175 541 IPR027417 -
Lele39g0796 707 Gene3D - 104 173 IPR023366 -
Lele39g0796 707 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 93 705 IPR022878 GO:0046034|GO:0046961
Lele39g0796 707 ProSitePatterns ATP synthase alpha and beta subunits signature. 533 542 IPR020003 GO:0005524
Lele39g0796 707 FunFam V-type proton ATPase catalytic subunit A 104 173 - -
Lele39g0796 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 547 IPR027417 -
Lele39g0796 707 CDD V_A-ATPase_A 172 544 - -
Lele39g0796 707 FunFam V-type proton ATPase catalytic subunit A 218 289 - -
Lele39g0796 707 CDD ATP-synt_V_A-type_alpha_C 559 665 - -
Lele39g0796 707 Pfam ATPsynthase alpha/beta subunit N-term extension 186 307 IPR031686 -
Lele39g0796 707 Gene3D - 543 695 IPR024034 -
Lele39g0796 707 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 101 173 IPR036121 GO:0046034|GO:1902600
Lele39g0796 707 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 555 637 - -
Lele39g0796 707 Gene3D - 218 289 - -
Lele39g0796 707 FunFam V-type proton ATPase catalytic subunit A 543 696 - -
Lele39g0796 707 Coils Coil 685 705 - -
Lele39g0796 707 Pfam ATP synthase alpha/beta family, beta-barrel domain 109 169 IPR004100 GO:0046034|GO:1902600
Lele39g0796 707 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 104 695 IPR005725 GO:0033180|GO:0046961|GO:1902600
Lele39g0796 707 CDD ATP-synt_V_A-type_alpha_N 105 171 - -
Lele39g0796 707 Hamap V-type ATP synthase alpha chain [atpA]. 103 706 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0796 Lele-ChrLele39 17007468 17014138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0796 85 707 Primary Pumps ATPases(2) AT1G78900 93.419 0.0 1204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0796 39 17007468 17014138 Lele39g0796 39 17007468 17014138 ECH
Lele37g0630 37 5264830 5270984 Lele39g0796 39 17007468 17014138 hybridization
Lele38g0595 38 5008146 5009678 Lele39g0796 39 17007468 17014138 hybridization