LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g0761	ATGGCAGGAGCGGAATCAAACAGACCCATACCAAAGATCAAAAGGTTCATAGGTGTCAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACATGTGAGGCTATGGCTCGGAACCTATGACACGCCGGAGGAAGCGGCTCGGGCTTACGACGAAGCAGCTCGGACCCTACGTGGTGAAAACGCCCGAACCAACTTCGCACCGCCAGCTAGCCAATTAGCTACAGGTGATCAGTCTGAGTCTGAATCCAAGCATGGCCTAAATTTTGCTTCTTTGAAAGCTAAGCTGAGCAGGAATCTTCAGAGTATAATGCCCAGATCAGGAAGTGAAACGAAGTCGTCAAAAAGTAGGGTAAGTGACCCTATCACTTTTGCTAGCATATTTCATCCCAGGAGGAGTTTCCTACCGTACCAGATTTTTTCATCACTTGATACAATGAAGAACATGGAGTGTATGGTGCAGCCTAGTATTATGGTACCTCCAACTGAAACTGATGATAATCATCAGCCTTGTTCTGGGGAAAATTCCAGTGTCTCTGATGATTGTGGCTGCTCCGATCATTGGGCCGGGTTCCGGCAAACTGTGACCGCGGACTCTGCTGTGTCGGACAGGTCGGATGCCGGGGAAGTAAGTACTGAAGGGGATCATCAAGGGATTATGGAGCAAGTGATGGGGTGGATCAATTGTGGCCCTGAGGAAGGTTTAAGAAGTAAGAGGCTTAAGGTGTCTTCTTCAGTATTTGTGCCTCCAACTTTCAGTTGGTCTTCATGTAGTAGTAGTTGTGGCTCTCCCTATCATGTTTATGATATTTAG	828	0.4783	MAGAESNRPIPKIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFAPPASQLATGDQSESESKHGLNFASLKAKLSRNLQSIMPRSGSETKSSKSRVSDPITFASIFHPRRSFLPYQIFSSLDTMKNMECMVQPSIMVPPTETDDNHQPCSGENSSVSDDCGCSDHWAGFRQTVTADSAVSDRSDAGEVSTEGDHQGIMEQVMGWINCGPEEGLRSKRLKVSSSVFVPPTFSWSSCSSSCGSPYHVYDI	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g0761	275	PRINTS	Ethylene responsive element binding protein signature	16	27	IPR001471	GO:0003700\|GO:0006355
	Lele39g0761	275	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355
	Lele39g0761	275	FunFam	ethylene-responsive transcription factor RAP2-11	14	73	-	-
	Lele39g0761	275	MobiDBLite	consensus disorder prediction	70	90	-	-
	Lele39g0761	275	CDD	AP2	14	72	IPR001471	GO:0003700\|GO:0006355
	Lele39g0761	275	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	14	166	-	-
	Lele39g0761	275	SUPERFAMILY	DNA-binding domain	15	72	IPR016177	GO:0003677
	Lele39g0761	275	Pfam	AP2 domain	15	64	IPR001471	GO:0003700\|GO:0006355
	Lele39g0761	275	Gene3D	AP2/ERF domain	14	73	IPR036955	GO:0003700\|GO:0006355
	Lele39g0761	275	ProSiteProfiles	AP2/ERF domain profile.	15	72	IPR001471	GO:0003700\|GO:0006355
	Lele39g0761	275	MobiDBLite	consensus disorder prediction	65	90	-	-
	Lele39g0761	275	SMART	rav1_2	15	78	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g0761	Lele-ChrLele39	16029839	16030666	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g0761	15	79	AP2-EREBP Transcription Factor Family	AT5G19790	69.118	2.16e-26	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele39g0761		AP2	1e-15	CL0081