Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0759 ATGGTGGAGCAAGGTGGAGAAGATGATGTTAACTATTCCACAGAAGACTGGTTCTTGCGAGCTCAAGAACTCGTGCCGATTGCAGTTAACAAGGCTAAAGAAGAGGTGAAGGGCTTTTCTGGTAGATGGAAAGTGATTGTTTCAAAGATAGAACAAATCCCATCATGTTTATCAGATTTGTCCAGCCATCCTTGTTTCTCCAAGAATTCTCTTTGTAAGGAGCAATTGCAGGTCGTGTTGAAGACACTCGAGGAAGCCATTGATTTAGCCGAGTTATGCACGAAGGAGAGGTATGAAGGTAAGCTTCGAATGCAGAGTGATCTCGACGCTTTATCTGGGAAACTGGATTTGAATTTACGAGATTGTAGGCTATTGATCAAGACTGGTGTCCTTGGTGAATCTACCCTTTCTTTCGGTTTGTCCGATGATGCGAAACAAGGGAACGATGTAAGAGAATTGTTCTCGCGCCTTCAGATTGGTGACTTGGAGGCGAAGCATAGAGCTATAGACAGTCTTATTGAAGCAATGAAGGAAGAAGAAAAGAGTGTTATGTCTGTTATAGGAAGAAGTCAAATTGCTTCTTTAGTTCAATTGTTAATGGCTACATGTAATATGATAAGGGAAAAGGCGGTTACTGTCATATGTTGTCTTGCAGAATCCGGGAAGAACTCCGAGAATTGGCTTGTTTCTGAAGGAGTTTTGCCGCCTCTGATTCGGCTTCTCGAATATGGTGGGGCTATTGGGAGAGAGAAGGCTGCAATGTGTCTTCAGAGGTTGTCCATGTCGGAGGAATCAGCCCGAGAAATCGTTGGACACGGTGGGGTTAGGCCACTAATTGAGCTATGTCATAATGGAGATTCTGTGTCCCAATCTGCTGCTGCTTGTTCTTTGAAGAACATATCTCGTGTTCCGGAATTGAGACAATCTTTGTCTCATGAAGGCATTGTGACGACAATGATCAATCTCCTGGATCATGGGATTCTGCTAGAATCCAAGGAATCTGCTTCAGAATGTTTACAGAATCTTACATCAAGCAATGAGAATCTAAGAAAGTCTGTTATATCAGAAGGTGGTGTTAAGAGCCTTCTTGCTTTTCTTGATTCTCCAATCCCTCAAGAATCAGCCATCACGGCATTGAGAAATCTAGTCGGATCAATTGGCGAGCGAGATTTGATCTCATTAGGCCTCCTTCCTCGTTTGATCCACATGATAAACTCGGGATCTTCCGTCGCTCAGCAGGCTGCTGTGTCAACACTATGTCGAGTTTTGATCTCATCAGATATGAAGAAACTGGTGGCCAAGGCCGGATTCATCCCGCTGCTAATCAAAATGCTGGAATCTAAATCGAACAGCGCGAGAGAATTCGCGGCGCAAGCCATCGCGACCTTGATGACGGTCGCACAAAACCGCAGGGAGGCGAGGAGGAATGATAAGAGTGTGCCAAATCTGGTTCAGTTGCTTGATCCAAGTCCACATAATACTGCAAAGAAATATGCAATTTCTTGTTTATGTTCACTTTCTTCAAGCAGGAAATGTAAGAAGCTGATGATTGCTTATGGGGCAATTGGATATCTAAAGAAGCTTAAAGAGACGGGAATTCCAGGAGCTAAAATGCTACTTGATAGATTGGAAAGAGGGAAATTCAGGAGCTTATTCAGCAGAAAATGA 1668 0.4359 MVEQGGEDDVNYSTEDWFLRAQELVPIAVNKAKEEVKGFSGRWKVIVSKIEQIPSCLSDLSSHPCFSKNSLCKEQLQVVLKTLEEAIDLAELCTKERYEGKLRMQSDLDALSGKLDLNLRDCRLLIKTGVLGESTLSFGLSDDAKQGNDVRELFSRLQIGDLEAKHRAIDSLIEAMKEEEKSVMSVIGRSQIASLVQLLMATCNMIREKAVTVICCLAESGKNSENWLVSEGVLPPLIRLLEYGGAIGREKAAMCLQRLSMSEESAREIVGHGGVRPLIELCHNGDSVSQSAAACSLKNISRVPELRQSLSHEGIVTTMINLLDHGILLESKESASECLQNLTSSNENLRKSVISEGGVKSLLAFLDSPIPQESAITALRNLVGSIGERDLISLGLLPRLIHMINSGSSVAQQAAVSTLCRVLISSDMKKLVAKAGFIPLLIKMLESKSNSAREFAAQAIATLMTVAQNRREARRNDKSVPNLVQLLDPSPHNTAKKYAISCLCSLSSSRKCKKLMIAYGAIGYLKKLKETGIPGAKMLLDRLERGKFRSLFSRK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0759 555 SMART arm_5 467 508 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 303 344 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 425 465 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 262 302 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 345 384 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 221 261 IPR000225 GO:0005515
Lele39g0759 555 SMART arm_5 385 424 IPR000225 GO:0005515
Lele39g0759 555 Pfam Armadillo/beta-catenin-like repeat 265 302 IPR000225 GO:0005515
Lele39g0759 555 SUPERFAMILY ARM repeat 151 530 IPR016024 -
Lele39g0759 555 Gene3D - 148 534 IPR011989 -
Lele39g0759 555 Pfam HEAT repeat 437 465 IPR000357 GO:0005515
Lele39g0759 555 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Lele39g0759 555 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 358 IPR000225 GO:0005515
Lele39g0759 555 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 553 - -
Lele39g0759 555 Coils Coil 159 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0759 Lele-ChrLele39 16013435 16015102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0759 267 537 U-box Gene Family AT2G23140 24.549 4.68e-08 53.9