Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0737 ATGGTGAGAGGGAAAATAGAGATGAAGCGTATAGAGAACGCTGCCAACAGACAAGTGACATTCTCAAAGAGGCGTAATGGACTCTTAAAGAAAGCTTTTGAGCTCTCAGTTCTCTGTGAAGCTGAAGTTGCTCTCATCGTCTTCTCTCCCAGAGGCAAGCTCTATCAATTCTCAAGCTCCAGGTTGCAGGATACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCTCCAGATACATGGAACTAAATATGCAGGAACAAACCCTAGAAGCAGAAAACGCAAGGCTCTGTGAAAAGCCAGCAGATCATGAGACGACAGTGAATGATACAAGCGAAAATCCAACCTCCTCGGAAGATGGTCCAACTTTAGATGTGGAAACTGACTTGTTCATTGGACTTCCAGAAACAAGAACAAGACGCAATATTCTTCCCCATAATACTACTCCATGA 459 0.4336 MVRGKIEMKRIENAANRQVTFSKRRNGLLKKAFELSVLCEAEVALIVFSPRGKLYQFSSSRLQDTIERYRSYTRDAETASRYMELNMQEQTLEAENARLCEKPADHETTVNDTSENPTSSEDGPTLDVETDLFIGLPETRTRRNILPHNTTP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0737 152 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Lele39g0737 152 Coils Coil 82 102 - -
Lele39g0737 152 FunFam MADS-box transcription factor MADS-MC 13 97 - -
Lele39g0737 152 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Lele39g0737 152 MobiDBLite consensus disorder prediction 99 127 - -
Lele39g0737 152 MobiDBLite consensus disorder prediction 110 125 - -
Lele39g0737 152 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele39g0737 152 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lele39g0737 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0737 Lele-ChrLele39 13581894 13588197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0737 1 96 MADS-box Gene Family AT5G62165 65.625 3.56e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele39g0737 SRF-TF 1.3e-26 No_clan