Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0697 ATGGATATGGTCTTTCGCTCACTAAGTACGTTGTTCTTCCTTCTTCTTCTTCCTTTTCTTCTTTCTAGTTGTGCCTATGGCTACTCACTGAATGAAGTGAAATCATGGTGTAGCCAAACCCCTAACCCTCAACCATGTGAATATTTCTTGATGAGCTCCAAAAGTTACAATAGACCGATAAAGAAGAAATCAGATTTCTTTCAACTTTCAGTTGACCTTGCTCTTGATAGAGCTCAAAAGGGCCTATCGAAGACTTACTCGCTTGGCCCTAAGTGTAGGAACGCCCATGAGAAAGCTGCTTGGGCTGATTGCCTTGAGCTCTATGAGCAAACCATCAACAGAATCACAAAAACTATCAACCCTAATCCCAAACGCAGCCAAGTTGATACTCAGACATGGCTCAGCACAGCTTTGACCAATCTCGAAACTTGCATGTTTGGGTTTTATGACCTAGGAGTTACCGACTATATGTTACCGTTAATGTCCAACAATGTTACTCAGTTGCTAAGCAATGCCTTGTCTCTTAACAAGGTTCAATATAGTCCGCCGAGTTTCAAAGATGGGTTCCCGGCCTGGGTTAAGCCTCGCGAGCGGAAGCTCTTGCAGGCGGCTTCTTCACCGGCTTCTCAGGCTAATGTCGTGGTGGCCAAAGACGGTTCGGGGAACTTCAAAACCTTGATGGAGGCAGTAAGTGCTGCACCAAAGAGTAACAAGGGAAGGTATGTTATATATGTAAAAGCAGGAGTTTACAATGAACAAGTTGAGATAAAAGGAAGTAATATTATGTTGGTGGGAGATGGTATGGGGAAAACTATAATTACAGGTAGCAAAAGTGTTGGAGGAGGCACTACAACCTTCCGTTCAGCTACTGTTGCTGCTGTTGGAGATGGATTCATTGCTCGAGACATGACAATTAGAAACACAGCTGGACCATCAAACCACCAAGCCGTTGCATTCAGATCGGGATCGGATCTCTCGGTGTTCTATCGATGCAGCTTCGAGGGATATCAAGATACACTCTATGTCCATTCCGAAAGACAATTCTACAGAGAATGTGACGTTTACGGAACGGTTGACTTCATCTTTGGTAATGCAGCTGTTGTTTTCCAAAACTGTAATCTCTATGCAAGAACACCTCCTCAAAAGGCCATCACGTACACAGCTCAAGGTCGAACCGACCCGAATCAGAACACCGGCATCATCATTCACAATTCTAAGGTCACTGGTGCCTCAGACTTCAACTCTAACAATGTCAAGTCTTACCTTGGAAGGCCATGGAAGAAGTTTTCAAGAACTGTATTTATGAAGTGTTCTCTTGATAGTTTGATTGATCCCGCCGGATGGATGCCGTGGAGTGGGAATTTCGCTTTGGACACTTTGTATTACGCTGAGTATGCAAACACTGGATCTGGCTCTTCTACTTCAAATAGGGTTAAGTGGAAGGGTTATCGTGTGATTGGTGCTTCTGAGGCCTCCCAGTTCACTCTTGGTAACTTTCTTTCTGGGAATTCTTGGTTACCTGCCACTGGTGTGCCTTTCACTTCTGGTCTTTAA 1554 0.4434 MDMVFRSLSTLFFLLLLPFLLSSCAYGYSLNEVKSWCSQTPNPQPCEYFLMSSKSYNRPIKKKSDFFQLSVDLALDRAQKGLSKTYSLGPKCRNAHEKAAWADCLELYEQTINRITKTINPNPKRSQVDTQTWLSTALTNLETCMFGFYDLGVTDYMLPLMSNNVTQLLSNALSLNKVQYSPPSFKDGFPAWVKPRERKLLQAASSPASQANVVVAKDGSGNFKTLMEAVSAAPKSNKGRYVIYVKAGVYNEQVEIKGSNIMLVGDGMGKTIITGSKSVGGGTTTFRSATVAAVGDGFIARDMTIRNTAGPSNHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDVYGTVDFIFGNAAVVFQNCNLYARTPPQKAITYTAQGRTDPNQNTGIIIHNSKVTGASDFNSNNVKSYLGRPWKKFSRTVFMKCSLDSLIDPAGWMPWSGNFALDTLYYAEYANTGSGSSTSNRVKWKGYRVIGASEASQFTLGNFLSGNSWLPATGVPFTSGL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0697 517 Pfam Pectinesterase 212 503 IPR000070 GO:0030599|GO:0042545
Lele39g0697 517 Pfam Plant invertase/pectin methylesterase inhibitor 32 175 IPR006501 GO:0004857
Lele39g0697 517 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lele39g0697 517 FunFam Pectinesterase 206 517 - -
Lele39g0697 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 178 IPR035513 -
Lele39g0697 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 177 IPR006501 GO:0004857
Lele39g0697 517 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Lele39g0697 517 PANTHER PECTINESTERASE 20 507 - -
Lele39g0697 517 SMART PMEI_2 28 175 IPR006501 GO:0004857
Lele39g0697 517 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Lele39g0697 517 SUPERFAMILY Pectin lyase-like 206 516 IPR011050 -
Lele39g0697 517 Gene3D - 207 517 IPR012334 -
Lele39g0697 517 CDD PMEI-like_3 35 177 - -
Lele39g0697 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 178 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0697 Lele-ChrLele39 8260194 8263802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0697 3 517 Carbohydrate Esterase AT2G45220 65.769 0.0 693