Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0670 ATGATAGACATCTTGCCCCGCTCCAGAGCTGATTTGGGCATATGGTCATCCTTTGCAAGTTTTCTCTTTAAATATGTTGGTTCACTCTTCAAACCCATCTACGCTGCCAGTTTGTTGATTCAGATAGCTGGGTTTGTATGCAATATGGCTTGATTGCTTGATCGTCAGTATCTTGAGGCTGATAAAATATGGATGGGCATGGATGCAATGAGTTTATTTGGTCAGAATTCCTGGTTACATCCTTGCACGCTTCAATTTTTGTATGGTGTTTCCATATTCTTTGTTAAAAAACATGTGAGAGACCACAGGACAAGTAGGATGTGGGATGCTGTAACATTAATGAAAGCTGGACTCAGATTCTGTCAGTATCTGACAACAGAATTTAAGAATGAGCAAAGTGAAGGAAAGCTTAAAATTGGGCAGTCTCGATACAGAGGTGGTGGTGGTAGGGGCAGTAGACCATTTAGACGGGGTGGCCGTGGCCATTTCAACCCCCGAGGTCGTGGCCCTTACCGTGGTGGAGGGCATGGCCATGGGGGTGGTAGGCACTTACCATCTCATTCTTCAGAATTTGTACCTACTGCTGCTGCTGGAAGCACATCGGTCGCACAACCTTCACCATTAGTATCTGTGCCTATTCCAGCACAGGTTCCAGCTGCACCATTGCATCTACCACCATGTAAGTTATGGTGTGAAATTTGCAAGGTTGAGTGCAATTCTGCTGAGATTATGGAGCAGCATAAGAATGGAAAGAGGCATAAAAAGAATTTGCAGGTACATGAGGAATTACAGAGGCGCAAAGCTATAAATGGTCAACAGGGTAGCCAGATTCCCTCTTCTCAATTGAATTTAACAACTCAGGCTGAGAAAGCTCTTGAACTGAATACAGAAGGGTGTCAAGCAGAAAATATGATCTCTGGAGCGACAGGTGAAAATCCTAAGAATGAACTTGATTTGCTGAACAATACAGGACAAACATCAGAAGTTCCAGCTAATGACCCTGAGGAAAACTCCAGGGATGGTTTGGCTTCAAGGGGCCGTGGTTCCAAGCGAAAAAAGATGAGAGGAGGCAAAGGAGGTAAATACATGAGAAATAACGATGGGTCAAGAAAGCCAGTGGAACCTCCAAAACCTAAACAGGCTTTATCTTTCATCTGTGAGTTGTGTAATGTTATATGTGAGTCACAGGTTGTGTATGACAGTCATTTGACTGGTAAAAAGCACCAATCGAATCTCAAGCGCGTCCATGGGCACCAAGCCATGTCCCAAGAAACAGGGCCTCAAGCAGTTCCCCCAACTAACGCCAGTGCTATGCCTAATTCAATTGACATTAGTGCTCTTGCAAATTCAATTAACTCTCAAGTCCAACAAGGTGTTAATGATCCACAAGTCCTCTTGGCTCAGCTCCTAATGACAGTACTGTCTCAAGCTCAAGCATCAACAGCAGCGGCACCCATAGGATCTGTAGCTTCTCAGCTGTCGGCACTCATACCAGCAGCTGGCTCAAGTTATGGGCTACCATTACAAAATGTCCCGCCGACACAAGCATCAGAAAGTGCTGCACATGGTGGGAATGAAGATCCTACAGGGAAAGAAAAAGATCAGGTGCTATCTGACCCACCGCTGGCTGCTGTTCCTCAAACTGCAGGTGGAAGCTCTGAAACTGAAGATAAGGTAGCTTTAGGAAGTCCAAGTGCAGCAAATGAGCAAGGAGCTTCAGAAGGCAATGGTCCTACTTCGTAG 1743 0.4527 MIDILPRSRADLGIWSSFASFLFKYVGSLFKPIYAASLLIQIAGFVCNMAXLLDRQYLEADKIWMGMDAMSLFGQNSWLHPCTLQFLYGVSIFFVKKHVRDHRTSRMWDAVTLMKAGLRFCQYLTTEFKNEQSEGKLKIGQSRYRGGGGRGSRPFRRGGRGHFNPRGRGPYRGGGHGHGGGRHLPSHSSEFVPTAAAGSTSVAQPSPLVSVPIPAQVPAAPLHLPPCKLWCEICKVECNSAEIMEQHKNGKRHKKNLQVHEELQRRKAINGQQGSQIPSSQLNLTTQAEKALELNTEGCQAENMISGATGENPKNELDLLNNTGQTSEVPANDPEENSRDGLASRGRGSKRKKMRGGKGGKYMRNNDGSRKPVEPPKPKQALSFICELCNVICESQVVYDSHLTGKKHQSNLKRVHGHQAMSQETGPQAVPPTNASAMPNSIDISALANSINSQVQQGVNDPQVLLAQLLMTVLSQAQASTAAAPIGSVASQLSALIPAAGSSYGLPLQNVPPTQASESAAHGGNEDPTGKEKDQVLSDPPLAAVPQTAGGSSETEDKVALGSPSAANEQGASEGNGPTS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0670 580 PANTHER OS06G0651300 PROTEIN-RELATED 157 457 - -
Lele39g0670 580 Gene3D Classic Zinc Finger 365 414 - -
Lele39g0670 580 Gene3D Classic Zinc Finger 225 262 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 302 377 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 502 580 - -
Lele39g0670 580 SUPERFAMILY beta-beta-alpha zinc fingers 369 416 IPR036236 -
Lele39g0670 580 Pfam Zinc-finger of C2H2 type 230 253 - -
Lele39g0670 580 Pfam Zinc-finger of C2H2 type 384 408 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 566 580 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 302 332 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 507 522 - -
Lele39g0670 580 MobiDBLite consensus disorder prediction 333 347 - -
Lele39g0670 580 SUPERFAMILY beta-beta-alpha zinc fingers 228 260 IPR036236 -
Lele39g0670 580 SMART ZnF_U1_5 381 415 IPR003604 GO:0003676|GO:0008270
Lele39g0670 580 SMART ZnF_U1_5 228 260 IPR003604 GO:0003676|GO:0008270
Lele39g0670 580 MobiDBLite consensus disorder prediction 136 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0670 Lele-ChrLele39 7080870 7084554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0670 202 412 C2H2 Transcription Factor Family AT5G61190 23.755 6.93e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0780 37 17153592 17164239 Lele39g0670 39 7080870 7084554 hybridization
Lele38g0721 38 18187981 18195364 Lele39g0670 39 7080870 7084554 hybridization