Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0660 ATGGAGAAGCAGAAGTGCAAGCTCTGCTTGAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGGTCTCACATGGTGAATCTTCCTGTTCCTCCAAAACCAGAGCACCCACCACCGCCACCATTAGTCCAACTCAGCTTCGAGGCCGACTCGGCCCCGTCGTTGTCTTCGTCGTCGTCGTCCTCAGAAGAAGAAGATGATGATAAAGCTCTCTGTTATGGCCTCAGAGAGAACCCTAAAAGAAGCTTTCGCCTTGTGGATCCTGATTTTTCGTTTCCTGTGGAATCCTCTGTAATTCTTCAAGACAGAGAAAGCGAGACTGAATCGTCCAAGAATAATCCAACTCGAACAAGATCCAAAAGGGTATGTAATAATAATAACAATCACCAGTTCCATCACCATCATCATCAGAAGAAGATGAAACCCAGTAATCATCATCATCATAAGAATAAGACCGAGTCGTCCTGGGTTGAGCCGGAACCGGTGAGTTTGATTACTGATGCTACCACCGAGGAAGATGTGGCATTTTGGCTTATGATGTTGTCTAGGGACGAATGGAAGAGACGAGAGGAAAAATACGAGGAAGAAGATGACGACGACGAAGAGGAAGAAGACGAGGACGAGGACGAGGACGAGGACGACGAGGAGGAAGATGACGAAGAAGAGAGATCTGTAGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCAAAGACAAGATCATCAGTTCGTGGAAGGTACAAATGTGAGACTTGTAATAAAGTATTTCGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAAACCGGTGATATGTGAACCGGAAGTTGATCAGCTTCAAGCGAATATTAACACTAATAATGCTCCTCCCATGGTGGCGGAGAAGAAAATCCATGAATGTCCGGTTTGTTTCAGAGTGTTTGCATCAGGTCAAGCTCTTGGAGGCCACAAGAGAACGCACGTGACCGGTTCTACAACAACTCCGGTTCGAACCCCATCAACCAGGTTCGGATCAGATAACAACAGTTTGATAGATCTTAATCTTCCTGCTCCAGTTGATGAAGATGAAATCAGCCAAATAGAAAATTCTGCAGCTTCAGATGCAGAATTCCTCGAACCCGGTTCACAAATCTTTCGGGCACAAGTAGCTTAA 1176 0.4524 MEKQKCKLCLRNFSNGRALGGHMRSHMVNLPVPPKPEHPPPPPLVQLSFEADSAPSLSSSSSSSEEEDDDKALCYGLRENPKRSFRLVDPDFSFPVESSVILQDRESETESSKNNPTRTRSKRVCNNNNNHQFHHHHHQKKMKPSNHHHHKNKTESSWVEPEPVSLITDATTEEDVAFWLMMLSRDEWKRREEKYEEEDDDDEEEEDEDEDEDEDDEEEDDEEERSVEDSDEFYEEMKSSKTRSSVRGRYKCETCNKVFRSYQALGGHRASHKKIKPVICEPEVDQLQANINTNNAPPMVAEKKIHECPVCFRVFASGQALGGHKRTHVTGSTTTPVRTPSTRFGSDNNSLIDLNLPAPVDEDEISQIENSAASDAEFLEPGSQIFRAQVA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0660 391 SMART c2h2final6 250 272 IPR013087 -
Lele39g0660 391 SMART c2h2final6 4 26 IPR013087 -
Lele39g0660 391 SMART c2h2final6 306 328 IPR013087 -
Lele39g0660 391 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 380 IPR044303 GO:0006355
Lele39g0660 391 SUPERFAMILY beta-beta-alpha zinc fingers 249 280 IPR036236 -
Lele39g0660 391 Gene3D Classic Zinc Finger 247 328 - -
Lele39g0660 391 MobiDBLite consensus disorder prediction 129 150 - -
Lele39g0660 391 MobiDBLite consensus disorder prediction 32 46 - -
Lele39g0660 391 MobiDBLite consensus disorder prediction 191 241 - -
Lele39g0660 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 306 333 IPR013087 -
Lele39g0660 391 MobiDBLite consensus disorder prediction 20 70 - -
Lele39g0660 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Lele39g0660 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele39g0660 391 Coils Coil 185 205 - -
Lele39g0660 391 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Lele39g0660 391 ProSitePatterns Zinc finger C2H2 type domain signature. 308 328 IPR013087 -
Lele39g0660 391 MobiDBLite consensus disorder prediction 196 230 - -
Lele39g0660 391 MobiDBLite consensus disorder prediction 103 117 - -
Lele39g0660 391 SUPERFAMILY beta-beta-alpha zinc fingers 302 331 IPR036236 -
Lele39g0660 391 MobiDBLite consensus disorder prediction 326 346 - -
Lele39g0660 391 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele39g0660 391 MobiDBLite consensus disorder prediction 323 346 - -
Lele39g0660 391 MobiDBLite consensus disorder prediction 103 162 - -
Lele39g0660 391 Pfam C2H2-type zinc finger 306 328 - -
Lele39g0660 391 Pfam C2H2-type zinc finger 249 274 - -
Lele39g0660 391 Pfam C2H2-type zinc finger 5 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0660 Lele-ChrLele39 6895397 6896572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0660 1 368 C2H2 Transcription Factor Family AT3G60580 39.200 7.73e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele39g0660 zf-C2H2_6 4.3e-12 CL0361