Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0657 ATGGCTTTGAGTACCCTCGATCATCATCAATCAAACTTGAAGCATTTCTGTAAGATCTGTAAGAAAGGTTTCGGGTGTGGGAGGGCGCTTGGTGGGCACATGAGGGCGCACGGCATGGGGGAGGACAGCTGGACTGTGGATGACGATGAGGATGCCGAGAGTGACTGGGATGAAAAGCAGGGCGATGGTGGCGGTGCCAATGTGCCGCCGAGCACAAGGCGGTTGTATGCTCTGAGGACAAACCCTAACAGATTAAAAACCTGTAGGAAATGTGATAATTGCGGTAAAGAGTTCTTGTCATGGAAGTCCTTTTTCGAACATGGAAATGGAAGGTGCACTAGTTCCGACCACATGGAGTCACCGGTTTCTTCCCCGATGTATGATGACGCTGATGGCGATGATGACATGGACCAGCGAGCTTGCGGTGGTTCATATAAACGGAAGAGATCAATTAGAGCCAAAGTTGGTACGTTAAGTGAAGAAGAGGACCTGGCGGCCAGCAGTCTCATTATGTTATCAAACGCCACTGTTGATCCTCTCGCCGTCACCGCAGTGGTCGAGCCCGAGGAATCTAGTGCGTCAGCGAGCAAAGATGAGGAGAGAAGAAACCCTATAAACTTTATTACCCCAATATCGTATTGTGTTCCGGCTGTAGTGGATCACAAAGCCAAAACTACTCTGGTTCCCAAAGGCATGTTTGAATGCAAAGCATGCAAGAAAATCTTCAATTCTCATCAAGCGTTAGGTGGCCATAGGGCAAGCCACAAGAAAGTTAAAGGATGCTTCGCTTCGAGACTCGACCAACTCGAAGATAAAGATGATGATGTCATAACTCATGAAGAATTTCTCCCCACAAAATCAAACTCAATTGCTCAGCATGATCATCATAATCCTTCCAATAATAATATTGACACGTTGTTAATGGCGTCGTCGTCCAAAAGGAAATCCAAAGTTCATGAATGCTCGATATGTCACCGGACTTTCTCGTCGGGACAAGCCCTAGGAGGGCACAAGAGGTGTCATTGGATCACACCAAATGCACCAGACTCATCCACATTGGCTAGGTTTCAGCAGTTTCAGGATCATATGGAACGAATGAATCAAATTCCCAAGTTTGATAACTCGGATCCGATCGATCTAAAGCTCGACCTCAACCTTCCTGCTCCTCTAGCCGATGATCTGGCACGGCGGACGGAGATTTTCTTACAGCCATGGTTAGGAGGAACGACAAAACAGAAGGATCAAAATAATAATAACAATACAAATACTCATACTAATAGTCAATGTCACAGCCCCAGCAACCGCGAAGTCCACCACCACCAGCATCGCCATGAAAATGAAAACGACAACGAAGACGACAAAAATAATAACAATAACAGCACTGTTTCCATGGAAAATATCGAAGATGAAGCTGATAGTAAGGTGAAGAAGTTAGCTAAACTAAGTGAGCTAAAGGACATGAATTTAGGTAGAAGTTCTTCCCCATGGTTGCAGGTGGGGATTGGTTCAACCCCTGGTGTGGGATCTGAACCATAA 1536 0.4603 MALSTLDHHQSNLKHFCKICKKGFGCGRALGGHMRAHGMGEDSWTVDDDEDAESDWDEKQGDGGGANVPPSTRRLYALRTNPNRLKTCRKCDNCGKEFLSWKSFFEHGNGRCTSSDHMESPVSSPMYDDADGDDDMDQRACGGSYKRKRSIRAKVGTLSEEEDLAASSLIMLSNATVDPLAVTAVVEPEESSASASKDEERRNPINFITPISYCVPAVVDHKAKTTLVPKGMFECKACKKIFNSHQALGGHRASHKKVKGCFASRLDQLEDKDDDVITHEEFLPTKSNSIAQHDHHNPSNNNIDTLLMASSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNAPDSSTLARFQQFQDHMERMNQIPKFDNSDPIDLKLDLNLPAPLADDLARRTEIFLQPWLGGTTKQKDQNNNNNTNTHTNSQCHSPSNREVHHHQHRHENENDNEDDKNNNNNSTVSMENIEDEADSKVKKLAKLSELKDMNLGRSSSPWLQVGIGSTPGVGSEP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0657 511 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Lele39g0657 511 Gene3D Classic Zinc Finger 12 110 - -
Lele39g0657 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Lele39g0657 511 Coils Coil 464 484 - -
Lele39g0657 511 PANTHER OS02G0659100 PROTEIN 8 505 - -
Lele39g0657 511 Pfam C2H2-type zinc finger 233 257 - -
Lele39g0657 511 Pfam C2H2-type zinc finger 318 343 - -
Lele39g0657 511 Pfam C2H2-type zinc finger 15 37 - -
Lele39g0657 511 SMART c2h2final6 89 117 IPR013087 -
Lele39g0657 511 SMART c2h2final6 233 255 IPR013087 -
Lele39g0657 511 SMART c2h2final6 319 341 IPR013087 -
Lele39g0657 511 SMART c2h2final6 15 37 IPR013087 -
Lele39g0657 511 MobiDBLite consensus disorder prediction 467 484 - -
Lele39g0657 511 ProSitePatterns Zinc finger C2H2 type domain signature. 321 341 IPR013087 -
Lele39g0657 511 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Lele39g0657 511 MobiDBLite consensus disorder prediction 408 432 - -
Lele39g0657 511 MobiDBLite consensus disorder prediction 433 454 - -
Lele39g0657 511 SUPERFAMILY beta-beta-alpha zinc fingers 316 342 IPR036236 -
Lele39g0657 511 MobiDBLite consensus disorder prediction 37 72 - -
Lele39g0657 511 MobiDBLite consensus disorder prediction 407 511 - -
Lele39g0657 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 319 341 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0657 Lele-ChrLele39 6831442 6832977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0657 102 386 C2H2 Transcription Factor Family AT1G02040 32.877 4.84e-30 118