Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0648 ATGGCTCTTTTCACTCTTCAGCTTCCGTTAACCGCTCAATTCTTCAATCCTCTTGTGGCTTTCTTTTCATTCTTGCTCATAGTGAGCGCTTCCTCAGATTGCTCCAACAACCCTAGAAAGTTTCTAAATTCTTCGTCATCCTACACTTCTGATTCCTATTGGTCTCCGGCGGATGCCACATGGTACGGTAGCCCCAACGGCGCCGGAAGTGATGGGGGTGCTTGTGGATATGGAAGTAGTGTAGGACAACCTCCATTTTCTTCGATGATATCAGCAGGAGGCTCTCCTATATATCAATCAGGCAAGGGCTGTGGAGGTTGCTATGAGGTGAAGTGCACGTCGAATCGAGCATGTTCGGGCAACCCAGTGACGGTGGTGATAACTGATGAGTGTCCTGGGTGTGGCTCTGCTCAGAGATTTCACTTTGATTTGAGTGGCACTGCTTTTGGCGCCATGGCTGTTTCTGGTCAAGCAGATCAACTTCGCAATGCTGGCAAGTTGGAGATTCAATACAGAAGTGTTGAATGCAATTTCCAAGGGACAACCATAGAATTCAAAGTGGACTCAGGATCAAACCCTTATTATTTCGCCGTTGTCATAGAATATGAGAATGGACATGGCCTTGCCAAAGTTGAACTCAAGGAAGCTCATGACTCAGCTTCATGGCGTCCCATGAAACAATCTTGGGGTGCAGTTTGGAAGCTTGACTCTGGCGGTTCACCACTTCAGGCACCATTCTCTGTCCGACTAACCGCACCAGATTCGTTGAACTCTCAGAACTCTGTCGAGGCTAACAATGTTATCCCAACAGGGTGGATTCCCGGTCAGACTTATCGATCTCTGGTGAACTTCCACTAA 858 0.4779 MALFTLQLPLTAQFFNPLVAFFSFLLIVSASSDCSNNPRKFLNSSSSYTSDSYWSPADATWYGSPNGAGSDGGACGYGSSVGQPPFSSMISAGGSPIYQSGKGCGGCYEVKCTSNRACSGNPVTVVITDECPGCGSAQRFHFDLSGTAFGAMAVSGQADQLRNAGKLEIQYRSVECNFQGTTIEFKVDSGSNPYYFAVVIEYENGHGLAKVELKEAHDSASWRPMKQSWGAVWKLDSGGSPLQAPFSVRLTAPDSLNSQNSVEANNVIPTGWIPGQTYRSLVNFH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0648 285 Pfam Lytic transglycolase 91 171 IPR009009 -
Lele39g0648 285 SUPERFAMILY Barwin-like endoglucanases 46 180 IPR036908 -
Lele39g0648 285 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Lele39g0648 285 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Lele39g0648 285 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lele39g0648 285 PRINTS Expansin/Lol pI family signature 164 180 IPR007118 GO:0005576
Lele39g0648 285 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Lele39g0648 285 Gene3D - 178 285 IPR036749 -
Lele39g0648 285 Gene3D - 37 177 IPR036908 -
Lele39g0648 285 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Lele39g0648 285 PRINTS Major pollen allergen Lol pI signature 112 122 IPR005795 GO:0005576|GO:0019953
Lele39g0648 285 PRINTS Major pollen allergen Lol pI signature 256 273 IPR005795 GO:0005576|GO:0019953
Lele39g0648 285 PRINTS Major pollen allergen Lol pI signature 92 103 IPR005795 GO:0005576|GO:0019953
Lele39g0648 285 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Lele39g0648 285 PANTHER EXPANSIN-B3 28 284 - -
Lele39g0648 285 SUPERFAMILY PHL pollen allergen 182 280 IPR036749 -
Lele39g0648 285 Pfam Expansin C-terminal domain 183 269 IPR007117 -
Lele39g0648 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 280 IPR007117 -
Lele39g0648 285 SMART dpbb_1 90 171 IPR007112 -
Lele39g0648 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 181 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0648 Lele-ChrLele39 6663335 6665460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0648 38 284 Expansin Gene Family AT1G65680 62.500 9.96e-107 309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0800 37 17491965 17494188 Lele39g0648 39 6663335 6665460 hybridization
Lele38g0729 38 18408140 18410559 Lele39g0648 39 6663335 6665460 hybridization