Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0646 ATGAGCTTCTGCGTTCCCACCTGGGATGTTGAAAACAGCAATATTCCCTCTGCCACCAGAACCTCTCTTCCTTCTAACTCCAACTCCACCGTCCCTGATCTCATCCCCACATTTGACTATGAAGTTGCAGAGCTTACATGGCAGAACGGGCAGATATGGATGAACGGAATGGGTCTTCCACGACCTCCGGCTAAACACATGACTTCTGGTGTGGCTGCGAGTACGAGGTCCGATCCATTGACGACGGCCACTACCCATTCGAAGTATCGTGCTAGTGGAACCTTAGAGTCTATAGTCAATCAGGCTACTAGGTTCTCCCAGAACACCAAATTAATGTCACAAAGCGTTGACGGTGACGGAGACAAGTTAGTAGTTCCATGGTTTGAACACCAACGTCGCAGCGACGGCAACGGCGGTGCTGGCGCTGCTGTATCGAACACAATGACTATGGATGCTTTGGTTCCTTGCTCGAATCGTACGGACGATCACAGTACGGCGGTTGTGGATGAATCCATGGGTGGTGGAAGGATTAGCACGCGCGGTGGCAGAATGGGTGGTTGCTCGGCACATGTGGGTTCTTGCAGTGGTGCTGCGAGAGTCCCGGGGGTAGCGCGTGTGCCTGTAGCCCGCCAGTGGGATCAAAGTTTGAGTGAGAGAGACAGCCATCACGTGAGCCCTGACACGTGCGATAGGGAAATGGATGTGGGTTATACTTCTGCTTCAATGGGTTCGCCGGAAAACACCAGCTCTATCCAGCCGTGCACGAAGATGACCGCCGCTGACGACCATGATTCTGTTTGCCACAGTACACAGAGAGAAGAAGATGAAGAGGAGGAGAAAAAAGAAAGAACGGTAAAATTTTCATCATCCAACAAACGGCGTAGAGCTGCTGATGTGCACAATCAATCTGAAAGAAAAAGGCGAGATAAGATAAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCCAGCAAGATTGATAAAGCTTCAATGCTCGATGAGGTAATAGATTATGTGAAGCAACTTCAAGCACAAGTTCAAATGATGAATAAAATGAGTCTATCTTCCATGATGTTGCCAATGACCCTGCAACAGCAACAACTTCAACTCATGTCCATGATGGCTCCAATGGGGATGGGATTGGGTATGGATATGAACACTATGGCTCGCCCTAACATCCCCACCGTCCCTCCAATTCTCCACCCTTCCATCCCCGGCTTCATGCCAATGGCTGCCTCATGGGACGCTTCTACTGGCGGCAATCGGCTTCAAGGAGCAGTGCCCGACTTCTTGACCCCATTCCTAGCATGCCAGACACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGCAAGTTCCAGCATCAAGTTCCAAGAACTGA 1410 0.5007 MSFCVPTWDVENSNIPSATRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMNGMGLPRPPAKHMTSGVAASTRSDPLTTATTHSKYRASGTLESIVNQATRFSQNTKLMSQSVDGDGDKLVVPWFEHQRRSDGNGGAGAAVSNTMTMDALVPCSNRTDDHSTAVVDESMGGGRISTRGGRMGGCSAHVGSCSGAARVPGVARVPVARQWDQSLSERDSHHVSPDTCDREMDVGYTSASMGSPENTSSIQPCTKMTAADDHDSVCHSTQREEDEEEEKKERTVKFSSSNKRRRAADVHNQSERKRRDKINQRMKTLQKLVPNSSKIDKASMLDEVIDYVKQLQAQVQMMNKMSLSSMMLPMTLQQQQLQLMSMMAPMGMGLGMDMNTMARPNIPTVPPILHPSIPGFMPMAASWDASTGGNRLQGAVPDFLTPFLACQTQPMTMDAYSRMAAMYQQMQQVPASSSKN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0646 469 Gene3D - 290 356 IPR036638 GO:0046983
Lele39g0646 469 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 468 IPR031066 -
Lele39g0646 469 MobiDBLite consensus disorder prediction 64 83 - -
Lele39g0646 469 MobiDBLite consensus disorder prediction 259 309 - -
Lele39g0646 469 Coils Coil 301 321 - -
Lele39g0646 469 CDD bHLH_AtPIF_like 295 355 - -
Lele39g0646 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 365 IPR036638 GO:0046983
Lele39g0646 469 Pfam Helix-loop-helix DNA-binding domain 300 345 IPR011598 GO:0046983
Lele39g0646 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Lele39g0646 469 SMART finulus 301 350 IPR011598 GO:0046983
Lele39g0646 469 MobiDBLite consensus disorder prediction 261 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0646 Lele-ChrLele39 6613201 6616633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0646 1 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.750 1.35e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele39g0646 HLH 7.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0802 37 17537411 17540922 Lele39g0646 39 6613201 6616633 hybridization
Lele38g0733 38 18498656 18502276 Lele39g0646 39 6613201 6616633 hybridization