Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0593 ATGGTGGTGGGTTCCTGTGTTCCGCAATCCGACGACACGACGTTTATCCGCAAAACTGATCATCACGGCAAGCGTTCGAGAGCACCCGATGGGAAATCGAGACCCAAAACAGAGCCAGACGGCGGTTCGTCGTGGTCGAAGGCGGCGCCGGGAGAGGGATCAGGTGTGCGTAGGTGCACCCACTGTGCATCAGAGAAAACCCCGCAATGGCGAAGCGGACCACTGGGACCCAAGACGCTGTGCAATGCGTACGGGGTGAGGTATAAGTCGGGTCGACATGTGCCCGAATACCGTCCAGCATCGAGTCCAACGTTTATGCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTGGAGCTCCGGGGGCAGAAAGAGCTGGTGATGATGAAGCAGGATGCCCAGTGA 405 0.5852 MVVGSCVPQSDDTTFIRKTDHHGKRSRAPDGKSRPKTEPDGGSSWSKAAPGEGSGVRRCTHCASEKTPQWRSGPLGPKTLCNAYGVRYKSGRHVPEYRPASSPTFMLSQHSNSHRKVLELRGQKELVMMKQDAQ 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0593 134 FunFam GATA transcription factor 49 134 - -
Lele39g0593 134 Pfam GATA zinc finger 59 93 IPR000679 GO:0006355|GO:0043565
Lele39g0593 134 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 117 - -
Lele39g0593 134 Gene3D - 51 124 IPR013088 GO:0006355|GO:0008270
Lele39g0593 134 CDD ZnF_GATA 58 105 IPR000679 GO:0006355|GO:0043565
Lele39g0593 134 ProSiteProfiles GATA-type zinc finger domain profile. 57 89 IPR000679 GO:0006355|GO:0043565
Lele39g0593 134 MobiDBLite consensus disorder prediction 14 37 - -
Lele39g0593 134 MobiDBLite consensus disorder prediction 1 57 - -
Lele39g0593 134 SMART GATA_3 53 103 IPR000679 GO:0006355|GO:0043565
Lele39g0593 134 PANTHER GATA TRANSCRIPTION FACTOR 27 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0593 Lele-ChrLele39 5607279 5607683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0593 52 134 C2C2-Gata Transcription Factor Family AT2G45050 79.518 8.08e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele39g0593 GATA 2e-13 CL0167