Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0592 ATGCTTGCCACGACTTCGTTTTCGTCCGTTTATGCCTTCGGGTTCGCCACCATAAGACCATCCGAATCCCGTTCAACCTATTATTTTCCGCTGAAGCTCAGAGCATCTCTCCACGACTATCCGCTCGCAAGCAAAATTGTCGTTAAAAATTTGCCATATTCTGCTGGTGAGACTAATCTAGAGAAGGCATTTTCAAACTTTGGCGAGATAGCTGAGGTTAAAGTTGTGAAAGATACCACAAAAAGATCCAAGGGATATGCCTTTATTCAGTACACTTGTCAAGATGATGCCATGCTTGCACTAGAAAGCATGGATCAAAAGGTATTCGATGGGCGGAAAATTTATGTAGAAATTGCAAAACCTGGGAAGGATGCTTTTCGTGGCCACCCAAAGACGTCAGGGCCCCCAAAGAAGTGGCTTAAGCCAGATCAAGACGAAGTGGTGGATTGCTGGTACTGA 459 0.4488 MLATTSFSSVYAFGFATIRPSESRSTYYFPLKLRASLHDYPLASKIVVKNLPYSAGETNLEKAFSNFGEIAEVKVVKDTTKRSKGYAFIQYTCQDDAMLALESMDQKVFDGRKIYVEIAKPGKDAFRGHPKTSGPPKKWLKPDQDEVVDCWY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0592 152 SMART rrm1_1 45 117 IPR000504 GO:0003723
Lele39g0592 152 CDD RRM_SF 46 117 - -
Lele39g0592 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Lele39g0592 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Lele39g0592 152 Gene3D - 34 142 IPR012677 -
Lele39g0592 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 44 141 - -
Lele39g0592 152 SUPERFAMILY RNA-binding domain, RBD 44 130 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0592 Lele-ChrLele39 5594671 5598027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0592 19 124 Eukaryotic Initiation Factors Gene Family AT4G34110 32.075 5.14e-09 52.0