Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0586 ATGTTGGGATACGAATGGGGGAATCCTCCGTCGACGATAGTGCTCGCCGGAAATGAAGAAGCTGGGGTTACTGCCGGTGCAGAGTCTGACCAGACCTGCCGCCAAATCTTTGACCACTACACTTCTCATTCGTTATTGCCGGAGCAGCTTCTTCATCAGCAACACCACCACCAGCCGGCAGGGCCCACTCAACACACCACCGCTAGCTCCACCGCTGATTTCTCTCACTACCACTTCAACCCTCAACCCCACCACCACAACATTCAGCACTCCTTCTTTGACCCACGCGCCTTCCCCGGCGCGTCCTCTTCTTCGTTCCCTCCACCACAGCCTCCTCCTCCTCCCCTGCTCTCTCTTGACCCGCTTCCGGGCGTCAACGCCGGCTCCCACTGTGGGCCTGGCGGGTTTCTGGTCGTTCCCAAGTCTGAGAACGTGGGTCGGTCCACTGACTTCCCAGCGTCGAGAATTGGGCTCAACCTGGGTGGCCGCACATACTTCTCATCGTCGGAGGATGATTTCGTGAGCCGACTCTACCGCCGGTCCAGGCCAGCCGAACCGGGGTCGATGATGATGGCGGCGGCTTCAAACTCGCCTCGTTGCCAAGCCGAAGGCTGCAATGCCGATCTATCACATGCTAAGCACTACCACCGCCGTCACAAGGTGTGCGAGTTTCACTCCAAGGCGGCCACAGTCATCGCCGCCGGCTTAACCCAGCGATTCTGCCAACAGTGTAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGAAAACGAAGCTGCAGGAAGAGACTTGCAGATCATAATCGTCGCCGAAGAAAAACCCAGCAGCCAAATCCAGAAATCATGAAAACCCAGATCGAGAATTCACGAAATTCCACTTTTGAAAGTGTTACAAGGTCTCCACAGGACTCCGGAGCTCAGGCGATGTCATCGGTGACAGTGGCGGTGTCTCCACCAGACTATTTCCGGCAAACGGCTTATCAGAATCAGAGGACAAGTCCATCGGCAACATCAAGCTCACTGTTCTTCTCAAGCGGGTAG 1041 0.5591 MLGYEWGNPPSTIVLAGNEEAGVTAGAESDQTCRQIFDHYTSHSLLPEQLLHQQHHHQPAGPTQHTTASSTADFSHYHFNPQPHHHNIQHSFFDPRAFPGASSSSFPPPQPPPPPLLSLDPLPGVNAGSHCGPGGFLVVPKSENVGRSTDFPASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSMMMAAASNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNPEIMKTQIENSRNSTFESVTRSPQDSGAQAMSSVTVAVSPPDYFRQTAYQNQRTSPSATSSSLFFSSG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0586 346 MobiDBLite consensus disorder prediction 53 87 - -
Lele39g0586 346 ProSiteProfiles Zinc finger SBP-type profile. 197 274 IPR004333 GO:0003677
Lele39g0586 346 MobiDBLite consensus disorder prediction 53 124 - -
Lele39g0586 346 SUPERFAMILY SBT domain 198 276 IPR036893 GO:0003677|GO:0005634
Lele39g0586 346 MobiDBLite consensus disorder prediction 278 346 - -
Lele39g0586 346 MobiDBLite consensus disorder prediction 102 120 - -
Lele39g0586 346 MobiDBLite consensus disorder prediction 263 346 - -
Lele39g0586 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 179 328 IPR044817 GO:0003677
Lele39g0586 346 FunFam Squamosa promoter-binding-like protein 14 191 261 - -
Lele39g0586 346 Gene3D - 191 261 IPR036893 GO:0003677|GO:0005634
Lele39g0586 346 Pfam SBP domain 200 273 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0586 Lele-ChrLele39 5463758 5466097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0586 1 247 SBP-box Gene Family AT1G02065 47.082 1.05e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele39g0586 SBP 1e-30 No_clan