LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g0582	ATGAACTATCAACAGAGGCTCCAAGTTGCGGCGAAAATCATTCTTGAACATGACGCACGCGACGCCGACGCACCGCTTAACGTCCAAGAGCTTGGGATCAAGGCGACCCTTAAACCTCACCAAATGGAGGGAGTTTCGTGGCTCATACGAAGGTATAAACTTGGCGTCAACGTTCTCCTTGTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCTGAGATTGTTAAATTTTCACCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAACAAGACAGGTGCCGCCTACGCAGGATTATTCATGAACATGTAAAGGGACAGTCAACAGCAGTCAATGTCTTGTTACCTTTTGATGTCCTATTAACAACTTATGATATAGCACTGATCGATCAGGATTTTCTTTCTCAAATATCATGGCAGTATGCAGTTATTGATGAAGCTCAAAGACTTAAAAATCCTTCAAGTGTTTTATATAATGTTCTCAAAGAGCGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACACTAGAGCAGTTCCTTTCCTCATTCAAGGACATCAGTGATCCTACATCAGTTCAAAATGCTGTGAAGGTAAAGGAGCAACTTAAGATACTGAAAAGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCATGCTACCATCTCTCACTGAGATAACTGTTATGGCACCCCTAGTTGGCCTGCAAAAAAAGGTTTACATGTCAATTTTGAGGAAGGAGCTTTCTAAGTTACTCGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATCCAGCTAAGGAAAGCATGTAGTCATCCTTATCTTTTCCCGGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCCAGTGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTCTGGACATCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTAAGAAAATATTCCTATGTGCGTCTTGATGGGTCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCATCAGCTAATTCAGTTTTGAATTCTGAAGCAGACCAAAATGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCGGATACGGTTATATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCGTTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGCATAAACCTTGTTACAGAAAAAACAGCAGAGGAGGTAATCATGCGGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCAGGAACATCAAGATGAACAAAAATCTGGAGTTGGGACTGGTGATCTAAAATCCATCATATTTGGCCTACATATGTGTGATCCTAATGAAAATAATGATGGAGAGCTTGGGGACATGGATTTGTCAGAAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATACATCTGACAAGGATGACAGAAAATTAGAGATCAACCCTAGAAATCTTCTAGAATCATATGACACTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTCGAAGAACTGTCAAAATCAAGTGGTGACTCAATCATGGAAATGAGGAATAGAGGAATCTTGGATGATGAAAAGCGTCTAAAACTTGAGGCTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGTCTAAGTGGGAAGCCCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCCCTCCAGATGGTGGTAATCCATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGTACAGATCCATTGAACGTTTGTCCGTCTGAACCTGCCATAATATTCAGCTGTGTTGATACCTCTGGAAACTGGGGCCGTGGAGGAATGTTTAATGCACTTAACAAGCTTTCTTTGAGCATTGGTGATGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTTGGGGACCTACATCTTATAAAGCTTGAAGATGACTGCAATGAACAAAATATGGATACAACTACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTTCGATCTCACTTCCCCACTTGGAGAGTTGCTTATCCAAAGCAGCATTTTCAACCAATCAAAATTCTGCATCAATACACATGCCCCGTATAGGTTATCAAGATGGATCAGATCGTTCTGAGTGGTACGCCATCGAGCGTCTTCTACGAAAATATGCTTCCATTTATGGCACCAGCATATATATACTATTATCGTCGACAATCTCAGTAAAGCTTATGATTGATTCAAGTATCAAAGAGGATAGTTCTTGGGAATCATGCTCTGCCTCCCATAATGTATATATTCTTCTCACTTTCTTGAGGCCACTGTCATTTCTAGGGTCTACCAGAATTGCCTTGTCATTGCCGGCCAGTGCGTCAGTCAGGTTAAAGATGGGTAAAGTGGCAGAGGCTAGTTTGATGGTTGTGCTTCTAGTTGGTAGGGTGAAGGAGAGAGAGTTGGAGGTGATGGAAGCATCAGTGGAATGCACAAGTGAAGGTGTGTAG	2823	0.4198	MNYQQRLQVAAKIILEHDARDADAPLNVQELGIKATLKPHQMEGVSWLIRRYKLGVNVLLVVLCPLSVTDGWVSEIVKFSPKLKVIKYVGGKQDRCRLRRIIHEHVKGQSTAVNVLLPFDVLLTTYDIALIDQDFLSQISWQYAVIDEAQRLKNPSSVLYNVLKERYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSSFKDISDPTSVQNAVKVKEQLKILKSILGAFMLRRTKSKLIESGTLMLPSLTEITVMAPLVGLQKKVYMSILRKELSKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFLELRKYSYVRLDGSIRAEERFAAIRSFSGPSANSVLNSEADQNGAFVFLITTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTAEEVIMRRAEKKLQLSLNVIGDNIQEHQDEQKSGVGTGDLKSIIFGLHMCDPNENNDGELGDMDLSEINAMTDKVIAMRDVHTSDKDDRKLEINPRNLLESYDTKEGASTSFNSDPSLDEASYLSWVKKFEELSKSSGDSIMEMRNRGILDDEKRLKLEAAKKKAEEKKLSKWEALGYHSLNVNDPIIPPDGGNPSDAGSVHFVYGDCTDPLNVCPSEPAIIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASAHGDLHLGDLHLIKLEDDCNEQNMDTTTPIWVALAVVQSYNPRRKVPRSSISLPHLESCLSKAAFSTNQNSASIHMPRIGYQDGSDRSEWYAIERLLRKYASIYGTSIYILLSSTISVKLMIDSSIKEDSSWESCSASHNVYILLTFLRPLSFLGSTRIALSLPASASVRLKMGKVAEASLMVVLLVGRVKERELEVMEASVECTSEGV	940

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g0582	940	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	61	197	IPR014001	-
	Lele39g0582	940	SMART	ultradead3	33	205	IPR014001	-
	Lele39g0582	940	CDD	Macro_Poa1p-like_SNF2	675	835	-	-
	Lele39g0582	940	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	25	242	IPR027417	-
	Lele39g0582	940	FunFam	Putative helicase CHR10	253	564	-	-
	Lele39g0582	940	SMART	helicmild6	365	460	IPR001650	-
	Lele39g0582	940	Pfam	Helicase conserved C-terminal domain	336	460	IPR001650	-
	Lele39g0582	940	Gene3D	-	255	566	IPR027417	-
	Lele39g0582	940	CDD	SF2_C_SNF	328	471	-	-
	Lele39g0582	940	Gene3D	Leucine Aminopeptidase, subunit E, domain 1	672	842	IPR043472	-
	Lele39g0582	940	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	339	510	IPR001650	-
	Lele39g0582	940	Gene3D	-	60	254	IPR038718	-
	Lele39g0582	940	SUPERFAMILY	Macro domain-like	676	841	IPR043472	-
	Lele39g0582	940	Pfam	SNF2-related domain	61	315	IPR000330	GO:0005524\|GO:0140658
	Lele39g0582	940	PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	61	845	IPR031053	GO:0003678\|GO:0006281\|GO:0006338
	Lele39g0582	940	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	507	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g0582	Lele-ChrLele39	5425171	5440599	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g0582	61	519	RAD5 or RAD16-like Gene Family	AT1G02670	25.417	7.41e-25	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele39g0582		SNF2_N	4.4e-40	CL0023