Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0580 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTGAGCTCCTTGTCCCCTACAGCTGCAGCTGCTACGGCCAAGAAGCTACCCATCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGTTAGAATATACTGCGCTTGAGAATAAAGTTTTCCAGCTAAAGGATAGGCAACATTCATATGATTCCATGTTAACGGTGGTCAAGAAGTCTTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGCTCAAACGGTTGAGTCTAGCAGCAGCAAATTGCATACAAACGTTAGATCAGTCACAGGTGTTGGTAGTCGATCCACTGTCGAGGATGATCTTCTTAGTCGACTTGAGCAAACTGGTGCAACTGAAAGTTCCTCCACATATAGTTGGGTCAACCAGATGGAAGAGCAGAGACAAGTTACTGTTGAAAAAGCTAAGAACATTATGCAAAATATTGTGGCAGCTATCAATAACGTTTGGTGTCTGAAAGATGGATTGCATGCTGCAGTGTTAACAAAACTCCCAGGAGAAGGTATGTGTGGGCAGAAGTCCTCCATTGATCTAAATATGGAAATTAAAACCTTGAGATCGGCATTTACTGAGCTTCATTTAAAGCACAAGTCTTTGGCCAGTGAGTTCAGAAGTCATCGAGATCTTGATTCAAAAAATAAAGTTGAGCTTAAAAGATTGAAAGGGGAACTGGCAAGCACTGTTGCAGAACTAGAAGAAAGTAATCACAAATTGGCAACTCTTAAGGCAGAGAGAGATGTAGCAAAAGGGGCAGCTTTCCCTGTCTTAAATGTCGGAACTAAGCATGCTGCTAGTGATAAGATCAGAGACAAGCAAAAGGATATGCATGAGATGGAATCTTCTTTGAAGGAGATATTGGACCAAGGATCCTCCAGACTAATGGAACTGAAAAATTTTCATGAGGAAAGAATAAGAATATTACAACAAATGTGTGATTTACAAAACACAGTAAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAACAATCAAAAGTAGAAGTTCTTGAGTATCAGACCTTATTCAAGAAACTACAGGTTGAGAAGGACAATCTTGCTTGGAGGGAGAGAGAGTGGTACATAAAGAGTGATTTGGTAGATGTTTTTCAAAGGTCTGTGTCAGTTGTTGAATCTAAAGTGGCTGATTTAGGGACTAAAATAAAGAAGAAAATCGAGGAGAGAAATGCGATAGAAAATAAACTGCAAGAGGCGGCAAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAAATCCCTGCTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTAAATTAAGCAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTGCGTGCAGATGTACAGTCTCTGACTAGTATTTTTGAGAGGAAGGTAAAGCAATGTGATGCTTTATCTCATAAATCTTCTGATCAACTTGCTGGGATACAGAGCCTGCTTGCTGTGGTACATGATTTGAGAGAAAGTGAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCAGAATACAAAGCATGGGCACATGTTCAAAGTTTGAAATCTTCTCTTGGCGAACACAACTTAGAGCTTCGAGTTAAGATGGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGATGAGATAGTGGACTTGAGACAGAAATTAGATGCTTCAAAAAGGGAGAAGGGCAAACTCTCTGATGTCTTGAAATCAAAAAGTGAGGAAATTGAAGCGTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAGCATCTGTTGCACCAGATTACTGAAAGAGATGACTACAACATCAAGCTTGTCCTAGAGGGCGTGAGGGCAAGACAAAAACAGGAATCTTTGATCGTGGAGAAGCAGGCCATTGAACGGGAGATCCAGCAATCGAATGCATCTCTTAATTTTTATGACATGAAAACTGCCAGGATTGATGACCAGTTAAAGTTGTGTTCAGATCAGTGTCAGAGACTTGAGGAGAATAAGGTTCAAAGTTCTGTTACATTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGTCAGAGAAACTCTGGAGGAAGTGCAATCAAAAGTTGGTATTAATAGAGTAACTTGCATGGAGTTACAAGTAGACTTAGAGAAAGAAAGGTTTTCGAGGAAAAGATTAGAGGAGGAGCTGGAGGTTGCTAGGAGAAAGGTTTCTTATCTTCAGGCACAGATTGAGGGCTCCTCTGTTATTGAAAAGCTTCAGCAGGAACTAGGAGAATACAGGGAAATTGTCAAGTGCAGTGTTTGCCAAGACAGGACAAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCCAGAAAGTTGTCGAGAGTAAGCAACGCAAGTGTCCATTATGTGCTGCAAGCTTTGGGCCTAATGATGTGAAGCCCATTTATTTGTAA 2646 0.4044 MGSMGEPDRKRRHLSSLSPTAAAATAKKLPILPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTALENKVFQLKDRQHSYDSMLTVVKKSWEQVIDDLVSCSAQTVESSSSKLHTNVRSVTGVGSRSTVEDDLLSRLEQTGATESSSTYSWVNQMEEQRQVTVEKAKNIMQNIVAAINNVWCLKDGLHAAVLTKLPGEGMCGQKSSIDLNMEIKTLRSAFTELHLKHKSLASEFRSHRDLDSKNKVELKRLKGELASTVAELEESNHKLATLKAERDVAKGAAFPVLNVGTKHAASDKIRDKQKDMHEMESSLKEILDQGSSRLMELKNFHEERIRILQQMCDLQNTVKNLKCITSSHAFQLARDQIEQSKVEVLEYQTLFKKLQVEKDNLAWREREWYIKSDLVDVFQRSVSVVESKVADLGTKIKKKIEERNAIENKLQEAAREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLTSIFERKVKQCDALSHKSSDQLAGIQSLLAVVHDLRESELELKLILEMYRRESIDSRDVVEARDSEYKAWAHVQSLKSSLGEHNLELRVKMANEAEARSQQRLATAEDEIVDLRQKLDASKREKGKLSDVLKSKSEEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESLIVEKQAIEREIQQSNASLNFYDMKTARIDDQLKLCSDQCQRLEENKVQSSVTLENTQRRLLDVRRSSQQVRETLEEVQSKVGINRVTCMELQVDLEKERFSRKRLEEELEVARRKVSYLQAQIEGSSVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIQKVVESKQRKCPLCAASFGPNDVKPIYL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0580 881 CDD RING-HC_BRE1_like 827 868 - -
Lele39g0580 881 PANTHER RING FINGER PROTEIN-RELATED 1 881 IPR013956 GO:0004842|GO:0010390
Lele39g0580 881 SUPERFAMILY RING/U-box 821 880 - -
Lele39g0580 881 Coils Coil 42 76 - -
Lele39g0580 881 Coils Coil 723 743 - -
Lele39g0580 881 Coils Coil 583 617 - -
Lele39g0580 881 MobiDBLite consensus disorder prediction 1 15 - -
Lele39g0580 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Lele39g0580 881 Coils Coil 248 282 - -
Lele39g0580 881 Coils Coil 426 446 - -
Lele39g0580 881 SMART ring_2 829 867 IPR001841 -
Lele39g0580 881 MobiDBLite consensus disorder prediction 1 21 - -
Lele39g0580 881 Coils Coil 772 806 - -
Lele39g0580 881 Coils Coil 152 172 - -
Lele39g0580 881 Coils Coil 299 319 - -
Lele39g0580 881 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Lele39g0580 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Lele39g0580 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 881 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0580 Lele-ChrLele39 5387145 5403107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0580 809 880 C3H Transcription Factor Family AT3G58030 32.895 3.53e-08 55.1