Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0577 ATGGATGCCACACCCTCTTCTTCTTTTTCGTCATCTTCTTCTTCATCATCAACGTCAATATCAGAGACAGATTCGTGTTTGAAATTCAAGCATGATCAGTCTGAAAGTGATGATCTGAATGGGAAGCAACAGAAAAGCAAGAAGAACAAGAGACAGAGAAGTGAGAGTTATGATAATAATAATTCCGAAGGGAATGATAATAAGCATTCTACTTACAGAGGTGTGAGAGTGAGAGCTTGGGGAAAATGGGTTTCTGAGATTCGTGAGCCCAGAAAGAAGTCAAGAATATGGCTTGGAACATTCCCTACTGCAGAAATGGCGGCTCGAGCCCATGATGTAGCCGCTTTAGCCATCAAAGGCCAATCGGCTTACCTCAATTTCCCAGAACTCGCTCACCAGCTTCCCCGGCCCGCCAGCTCGTCTCCCAAAGACATCCAGGCCGCGGCTGCAAAGGCGGCGGCAGCCACCACCACATTCGATGAGGTCAAACACTGTCAAGCCGAGGCTGAAGCCGGAGGAGCCGAGCCGAGCAACGGAGAGCAGGCCACTTCTTCTTCTTCTTCCTGTTCTGTTCCTGAGGACGAAGACACATTGTTTGATCTTCCAGATCTCTTCACTGATGGGGACATTAATGGAGTCTTCTCGTATTCTTCTTGGAATTTATGTGCAATAGTTGATAGTGGTGGTTTAAGGCTTGATGAGCCTTTTTTATGGGATAAATATTAA 726 0.4656 MDATPSSSFSSSSSSSSTSISETDSCLKFKHDQSESDDLNGKQQKSKKNKRQRSESYDNNNSEGNDNKHSTYRGVRVRAWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGQSAYLNFPELAHQLPRPASSSPKDIQAAAAKAAAATTTFDEVKHCQAEAEAGGAEPSNGEQATSSSSSCSVPEDEDTLFDLPDLFTDGDINGVFSYSSWNLCAIVDSGGLRLDEPFLWDKY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0577 241 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Lele39g0577 241 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Lele39g0577 241 MobiDBLite consensus disorder prediction 25 57 - -
Lele39g0577 241 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Lele39g0577 241 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Lele39g0577 241 MobiDBLite consensus disorder prediction 169 194 - -
Lele39g0577 241 MobiDBLite consensus disorder prediction 1 24 - -
Lele39g0577 241 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Lele39g0577 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 206 - -
Lele39g0577 241 MobiDBLite consensus disorder prediction 177 193 - -
Lele39g0577 241 MobiDBLite consensus disorder prediction 1 73 - -
Lele39g0577 241 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Lele39g0577 241 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Lele39g0577 241 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Lele39g0577 241 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0577 Lele-ChrLele39 5348115 5348840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0577 67 237 AP2-EREBP Transcription Factor Family AT2G44940 53.234 1.07e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g0577 AP2 2.1e-13 CL0081