Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0567 ATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCTGTCAGTGTGAAAGTTCTACCAAATGGAAATGAAGTAGATGAGAAGGTCATGCCATTAGAGTTCAAAACTGGGAAAGCAATGTCTGGCCAGGCAAGATTCTGGTACCTGAAGACTATTGATTCTGGTCTTCTATATTATCTCCAGTCAGATCAGACAGAGGGCATCGTGGTTCAAAGATCTGACTTAGTTGGTCTAATCATGAGACGTAATGAGCTCGCAAGTGATATTCTGAAGGCATTAAGCACACAACAACTGCCTCCAATGTTACAGAGTCCAAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCATAAGGTTCAAGGAGGAAGTGCAAAGAGTAGTGGATTGGGAGATGTGTTTGATTCACAAACTAATCAGCTTTCATCTACTTACTGTAAGTTCCTCTTCCATTGGGATCGGCTGATTGACTTGGAGGCAAAACAGACTGAGCTTGTGAAGAAAGAGATGTGGCGATCACATATTTTTAAAAGTCAGAACAGTACTGGCCTTTCTTCTGTCATCCTTGATGCTTCAAATAAGATTGCGTCTCAGAAATCGATTAAAGATAATTGCTTCATTTATCGTTTTGTCCGATGTGATCCATCTGAAGTGTCTGATGGTGATCCTTCTAATGCTTCAACAAATTTAGATCTCAAACTAAGAAGTGGAGACTATGTGATATTGAGCACTAAATCTAGCACTCAAGCTATTGCTAGTGGGGTGATTTCAGATATTAGTCATGCCCATGTTTCTGTTTCCTTTTCAAAGCGCCTGCGGATTCCTGGAAGCACCTCCACTAGCCAAGATCTCTATAAACAGGTTTGGAGAATTGATAAGGATGAAACTGTGACTTCATTTGCTATTATGAGGTTTAATCTAGTACAACTTTTTCTGCAAAATGCTCAAAGTACTCATCTGAGGAAAATGATTGTTGATCTTGAGGCTCCTAAATTTGACAGCGGATCTATGGTCAGTCAGGACCCTGCAATATCATATGTGTGGTCAGAGAAGAGTTTGAACGATGATCAGCGTAGATCAATCCTCAAGATTCTTACGGCAAAGGATTACGCACTTATACTAGGAATGCCTGGAACAGGAAAGACATCGACCATGGTTCATGCTGTGAAAGCATTATTAATCAGAGGCACATCTATTTTGCTGACAGCCTATACAAACTCAGCTGTAGATAATTTGCTTATCAAATTAAAAGCTCAGGGAATTGATTTTGTGCGCATTGGAAGACATGAAGCTGTGCATGAGGAGGTTAGAGAACATTGCCTTTCAGCAACGAATGTGCAAAATGTTGATGAGATCAAAGTAAGGTTAGAACAAGTTAAAGTAGTTGCAGTTACATGTCTGGGCATCACCAGTCCCTTGCTTGCCAACAGGACTTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACCCTACCGGTGTCCTTGGGCCCTCTCATGTTTTCTTCAATGTTTGTACTTGTGGGTGATCACTATCAACTTCCTCCACTTGTTCAGAGTGCAGAGGCTCGAGAGAATGGTATGGGGATAAGTTTATTTTGTAGGCTCTCAGAAGCACATCCACAGGCAATTTCAGCACTACAGAGTCAGTACCGTATGTGTCAGGGCATTATGGACCTGTCAAATGCCTTGATATATGGTGATAGGTTAAGGTGCGGTTCCACTGAGATTGCTAATGCAAAACTTGAGTTTTCTACCTTAAAATGTGGCTTACCTTGGCTAAAAAATGTTTTGAATCCAGGCAGGCCAGTGATATTTATTAATACTGATAAATTGCCCGCTTTAGAGGCGAGAGAACAGAAGACTATAAATAACCCTGTTGAAGCTCACATAATCATTGAGATAGCAAAGGCATTAATAAAACATGGAATTGGTGAAGAACATGTTGGCATTATTACACCTTACAATTCCCAGGCAAACCTCATCCGTCAGGCCGCTTGCATGACCTCGTTGGAGATTCATACCATTGACAAATACCAGGGTAGAGACAAAGATTGTATATTAGTATCTTTTGTGAGATCTCGTGAAAATCCATCAAGCTGTGCTTCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTCACACGTGGAAAGAAAAAGCTGATAATGGTGGGATCTTGTAGAACTCTATCAAAGGTGCCATTACTGAAGCTTCTCATAAAAAAGGTTGAGCAGCAATCAGGTATTTTTAGTGTGTCTAAGAAGGATATCTATCAGAAAGGAGAGCTCAAAAGGTGTTCCCAGTTCATGAGATGA 2340 0.4085 MAWAPKYGLKGMIDASVSVKVLPNGNEVDEKVMPLEFKTGKAMSGQARFWYLKTIDSGLLYYLQSDQTEGIVVQRSDLVGLIMRRNELASDILKALSTQQLPPMLQSPSICRGCRHLNVCSIYHKVQGGSAKSSGLGDVFDSQTNQLSSTYCKFLFHWDRLIDLEAKQTELVKKEMWRSHIFKSQNSTGLSSVILDASNKIASQKSIKDNCFIYRFVRCDPSEVSDGDPSNASTNLDLKLRSGDYVILSTKSSTQAIASGVISDISHAHVSVSFSKRLRIPGSTSTSQDLYKQVWRIDKDETVTSFAIMRFNLVQLFLQNAQSTHLRKMIVDLEAPKFDSGSMVSQDPAISYVWSEKSLNDDQRRSILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVHEEVREHCLSATNVQNVDEIKVRLEQVKVVAVTCLGITSPLLANRTFDVCIMDEAGQTTLPVSLGPLMFSSMFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSTEIANAKLEFSTLKCGLPWLKNVLNPGRPVIFINTDKLPALEAREQKTINNPVEAHIIIEIAKALIKHGIGEEHVGIITPYNSQANLIRQAACMTSLEIHTIDKYQGRDKDCILVSFVRSRENPSSCASSLLGDWHRINVALTRGKKKLIMVGSCRTLSKVPLLKLLIKKVEQQSGIFSVSKKDIYQKGELKRCSQFMR 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0567 779 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 455 556 - -
Lele39g0567 779 CDD SF1_C_Upf1 559 752 IPR041679 -
Lele39g0567 779 Gene3D - 557 765 IPR027417 -
Lele39g0567 779 Gene3D - 2 121 IPR011604 -
Lele39g0567 779 Pfam AAA domain 461 526 IPR041677 GO:0004386
Lele39g0567 779 Pfam AAA domain 359 450 IPR041677 GO:0004386
Lele39g0567 779 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 301 450 - -
Lele39g0567 779 Gene3D - 283 454 IPR027417 -
Lele39g0567 779 Gene3D - 455 556 IPR027417 -
Lele39g0567 779 PANTHER DNA2/NAM7 HELICASE FAMILY 319 760 IPR045055 -
Lele39g0567 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 744 IPR027417 -
Lele39g0567 779 CDD DEXXQc_DNA2 358 558 - -
Lele39g0567 779 FunFam DNA replication helicase 557 770 - -
Lele39g0567 779 Pfam AAA domain 536 735 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0567 Lele-ChrLele39 5159310 5171751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0567 1 500 Core DNA Replication Machinery Family AT1G08840 63.308 0.0 658