Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0549 ATGGAGTTTCTCAAACTCGAAACCCCCAAAACTAACAGTGACCAAGTCGTCATCAACATGGATCTGCAACAACACCACCACCAAAACCCTAAACAAGATTATTCTCCTCAATCCTATAATCATCCCAGAAACAGAGCACTCCAACGCCTCAATTTTTCCAAACCAAGATCACGTTTTGAGGAAATCAACTACCCTATCCCAACGCCCAAACCAACCTACAATCACATCCCTGAATCAGATGATCATAGCCAGCCCTTGAGTTCGCAAACAGAAAACCCTACTAACTACTCTTCCACTGAAGAAGACGACGACGACGAATGGTTCGAAAACGGAGACGACGCAGCCGACGAAGCCACCGGAAAGAGCAGAAAGAGGAAGAAGAAGATCAACAAGAGGGCCTTACTGGAATGGACTTTGTTCCTCATCATCATGACTTGCCTGGTATGTTCTCTCACTATTAAATCCCTCGAACACAAGACTCAGTGGAGCTTAGAATTCTGGAAATGGTGCTTGCTGGTGATGGTAATCTTCTGTGGCCGTCTCGTCTCCGAATGGGTAGTCCGAATCCTCGTTTTTCTCATTGAACGCAACTTCATGTTGAGAGAGAAAGTACTCTACTTCGTTTACGGTCTTCGAAAGAGTTTTCAGAACTGTGTGTGGCTTGCCCTAGTTTTGATCGCATGGATGATTATGTTCCATGAAGCTCATAACAAAAACAAAGTCCTCAAGAAGTTCTTCAGGGCTCTCGTCGCCATCCTTGTCGGCGCCACCATATGGTTACTAAAAATAGTGTTCGTTAAGGTTCTTGCGTCGTCGTTCCATGTTGCAGCTTTCTTTGACAGAATGAAAGAGAGTGTTTTCCATCACTATGTCTTGGAGGCACTCTCCGGGCCGCCGTTGGACGAGGAGGAGATGGACCTGCCGCGGCTGCACTTGCAAGCGTCGAAGACGATGCCGGCGAGGCTGAGGTACGAGAAGTCTCAGCCGTTGAAGTCGAGATCGAGGAAGGGAGATGGGTCGAGGAGGATCGACATAGAGAAGCTGAAAAGGCTGAGCATGGACGGGAGAGCGACGGCGTGGAGTGTGAAGAGGTTGGTGAGCTACGTGATGTCGTCAGGATTGTCGACGATTTCGAGGACAGTGGACGATTTTGCCAACGCCGAGTCGGAGATTAATAGCGAGTGGCAGGCTAGGACTTGTGCTCAGAGGATATTCAAGAATGTTGCAAAGGATGAAGCCAAGTACATAGAAGAAGAAGATTTACTGAGATTCTTGAAGAGAGACGAAGTGTACATGATATTTCCTTTATTTGGAGGAGCACTTGAAACTGGAAAAATTACCAAGTCCTCATTTCGAAATTGGGTGGTGTATGCATACGTAGAGAGAAAAGCATTGGCACATTCGTTGAACGATACGAAAACGGCAGTTCGTCAACTACACAAACTGGCGAGTGCAATTGTAATAGTGATAATAACAGTGATGTCTCTCTTGGTGATGGGTTTGGCCACAACTAAAGTCATCTTCGTCGTCACTTCTCAACTCTTGCTCGTAGGTTTTGTGTTTCAAAATATGTGCAAAACTGTCTTTGAATCCATCATCTTCGTCTTCATCATGCACCCTTTTGATGTCGGAGATCGCTGTGTCATTGATGGCATTCAGATGATTGTGGAAGAGATGAATATATTGACAACAGTGTTCTTAAGATATGATGGTGAAAAAATATATTATCCGAATTCAGTTCTGCTGACCAAACCTATAAGCAATTTCAGAAGGAGCCCTGATATGGCGGACGCTGTGGAATTCACAATTGACGCCTCTACCTCTACCGACAATCTCTCTGCCCTAAAGAAAGCCATTCAAGCGTACATTGAGAGCAAACCCAAGTACTGGAATCCAAAACACGTAGTGATAGTGAAGGAGATAGAGAACATGGACAAGATGAAGATGGTTCTAGCTGTTCAACACACCATTAACCATCAAAACTACGGCGAGCGAAACGGCCGTCGATCGGAACTTTTGCTCGAGCTGAAGAGGATCTTCGAGAGCCTTGGCATCAAGTATCGTCTTCTTCCTCAAGAAGTACATCTCTCGCAGGTTAACTTTGGCAACAATAATAGTGGAGCCATCCCACTTTCTTCCAAATCCTTCTGA 2151 0.4551 MEFLKLETPKTNSDQVVINMDLQQHHHQNPKQDYSPQSYNHPRNRALQRLNFSKPRSRFEEINYPIPTPKPTYNHIPESDDHSQPLSSQTENPTNYSSTEEDDDDEWFENGDDAADEATGKSRKRKKKINKRALLEWTLFLIIMTCLVCSLTIKSLEHKTQWSLEFWKWCLLVMVIFCGRLVSEWVVRILVFLIERNFMLREKVLYFVYGLRKSFQNCVWLALVLIAWMIMFHEAHNKNKVLKKFFRALVAILVGATIWLLKIVFVKVLASSFHVAAFFDRMKESVFHHYVLEALSGPPLDEEEMDLPRLHLQASKTMPARLRYEKSQPLKSRSRKGDGSRRIDIEKLKRLSMDGRATAWSVKRLVSYVMSSGLSTISRTVDDFANAESEINSEWQARTCAQRIFKNVAKDEAKYIEEEDLLRFLKRDEVYMIFPLFGGALETGKITKSSFRNWVVYAYVERKALAHSLNDTKTAVRQLHKLASAIVIVIITVMSLLVMGLATTKVIFVVTSQLLLVGFVFQNMCKTVFESIIFVFIMHPFDVGDRCVIDGIQMIVEEMNILTTVFLRYDGEKIYYPNSVLLTKPISNFRRSPDMADAVEFTIDASTSTDNLSALKKAIQAYIESKPKYWNPKHVVIVKEIENMDKMKMVLAVQHTINHQNYGERNGRRSELLLELKRIFESLGIKYRLLPQEVHLSQVNFGNNNSGAIPLSSKSF 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0549 716 Gene3D - 540 589 IPR023408 -
Lele39g0549 716 MobiDBLite consensus disorder prediction 51 122 - -
Lele39g0549 716 Pfam Mechanosensitive ion channel 481 686 IPR006685 GO:0016020|GO:0055085
Lele39g0549 716 FunFam Predicted mechanosensitive ion channel 540 589 - -
Lele39g0549 716 MobiDBLite consensus disorder prediction 97 113 - -
Lele39g0549 716 SUPERFAMILY Sm-like ribonucleoproteins 530 589 IPR010920 -
Lele39g0549 716 MobiDBLite consensus disorder prediction 78 96 - -
Lele39g0549 716 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 27 699 IPR016688 -
Lele39g0549 716 PIRSF Memb_At2g17000 5 711 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0549 Lele-ChrLele39 4837876 4843850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0549 43 700 Mechanosensitive Ion Channel Family AT5G12080 45.441 0.0 592