Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0533 ATGCGAGCAAGGCAAGCATGCCACTTCCTCAGGCATTTACTTCCTCTTCCCAATTTCATTTCCATTCCTTTCCCCACCAACTTCACCTTCGTCTTCATCACTCCCCAACCCCCCATCACGTACTCTCCCCCTCCCTCCATTTATATACCCCTTCTTTCTCATTTCCCTCCTCTTCTCTCTCTCTCTCTCTTTTCAACCATGGCTTCTCCGCCAATTTACACCCTAAACGTCGTCGGATCAGACCCTACCTCCTTCACCGAGACTTCTAATTCCGAGGATCGTGTTTCTTCTCATTCAGCTTTTCAGAATCTCAACACCAGTGTCCTGATTATTGTTATCGTCCTCGCCGTTACTGTCATTGTGTCGCTCTCTCTCTGTTTCATCCTTCGTCACCTCAATCTCCGGTGTCTCCGTCGGCTGTCTCCGTCGTCGTTGTCATCGCCATTCAGGAGGAATGCCGCTCCTGCGACTGCTACTACGACTCCCGGTTACTCTTCCAGTCGTCGCGTCTCGCCGGAGATTCCCTCGGCTTCCATTATTGACTCGCTTCCGATGTTCACGTTTTCTTCTATTACTCGCCGCTCTGCTGACTCTGATACTACCGGCGGAGATTGTGCGGTTTGCCTCTCGAAATTTGAGCAGAGAGACCTCCTCCGTCTTCTCCCGTTGTGTTGTCATGCGTTCCATGTGGAATGCATAGACACTTGGCTTCAGGCGAACTTGACTTGTCCGTTGTGCCGATCTGCGATTTTTGCCTCTGATTCGGACTTAATGAAGGTTCTTCGATCGTCTTCGAGCGGAGGTGGAGGCAGCGATAGTTTCCGGCTTGAAATCGGAAACATCAGCCTGCGGGGAACGGCACCACAGGACGTGGCTGGAGACGCGCGCGCCAGGTCGCGGTCGCGGTCGCGGTCGAGGTCTTATTCCGTTGGCTCGTTCGAGTATTTTGTAGAGGAGGATTTGGAGGTTCCTATCAGCCACGCGCATCGGAGGAGCGTGTCGGATAACAAGGATGAAACGGTAGTTGCAGAGTCTCAACCACCGGCAACGGCTCAGTCATTCTATGAGGCGAGCTTAGCCGCCGATGTAGCAGGCAGCGGGAGGAGCTGGCTGAAGGAATACGTGGACAGGCTCTCATCTTCTATATCGTCTCGAACAGTATCATTTCGAGGCTCTGGAAGGTTCTTTACGGGCGGTAACTCTAGCCACCGAAGCGAAGCCGCGGGCTCAGCCGAGGACTGCGACCTTGAAGCAATCAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTCTCAGGGGTATGA 1308 0.5291 MRARQACHFLRHLLPLPNFISIPFPTNFTFVFITPQPPITYSPPPSIYIPLLSHFPPLLSLSLFSTMASPPIYTLNVVGSDPTSFTETSNSEDRVSSHSAFQNLNTSVLIIVIVLAVTVIVSLSLCFILRHLNLRCLRRLSPSSLSSPFRRNAAPATATTTPGYSSSRRVSPEIPSASIIDSLPMFTFSSITRRSADSDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQANLTCPLCRSAIFASDSDLMKVLRSSSSGGGGSDSFRLEIGNISLRGTAPQDVAGDARARSRSRSRSRSYSVGSFEYFVEEDLEVPISHAHRRSVSDNKDETVVAESQPPATAQSFYEASLAADVAGSGRSWLKEYVDRLSSSISSRTVSFRGSGRFFTGGNSSHRSEAAGSAEDCDLEAIRLGEEISETFRWLSGV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0533 435 Pfam Ring finger domain 204 247 IPR001841 -
Lele39g0533 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 102 336 - -
Lele39g0533 435 SMART ring_2 205 246 IPR001841 -
Lele39g0533 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 251 IPR013083 -
Lele39g0533 435 ProSiteProfiles Zinc finger RING-type profile. 205 247 IPR001841 -
Lele39g0533 435 FunFam E3 ubiquitin-protein ligase ATL6 165 253 - -
Lele39g0533 435 MobiDBLite consensus disorder prediction 146 170 - -
Lele39g0533 435 MobiDBLite consensus disorder prediction 329 348 - -
Lele39g0533 435 SUPERFAMILY RING/U-box 180 253 - -
Lele39g0533 435 CDD RING-H2_PA-TM-RING 204 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0533 Lele-ChrLele39 4657591 4658898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0533 178 254 C3H Transcription Factor Family AT5G05810 51.948 2.95e-20 90.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0878 37 18584404 18585492 Lele39g0533 39 4657591 4658898 hybridization
Lele38g0811 38 19793088 19795205 Lele39g0533 39 4657591 4658898 hybridization