Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0508 ATGGATGATATAGTGTATAGCTTGACGCTGTTCTTCACTGTAATCCTTATAACCTGTGTCCTCTCAGTAATATCATATCGTTGCACCACACAGTCCAACGCAGCAAGCCAGCAATCACAAGGGGTTGATCGCAGTAATATTGATGCTGTTATAGACTCGAACCAGACGACGACGGTGACGGTGACGGTAGAGCCATGCCTGCCGGATCATCAAACTAGGGTTTGCAGCTGCCACGACGATGACCCAGAGCTTCTTTTCGGTTCAAAAGCCAATAAGTTGTGTGACGATAAAGATGGTGATGGTGGTGTTTCAAGTAGCCCTAGTTGCTGCTCAATATGCTTGATGGATTACAAAGAATCTGATATCTTGCGAGTTTTGACCGAATGTGGTCATTTCTTTCATGTCAACTGTGTTAATCCTTGGATCACATTGCATTTGACCTGCCCTATTTGTAGGAGTTTAGTAAAGAATTTTTAA 477 0.434 MDDIVYSLTLFFTVILITCVLSVISYRCTTQSNAASQQSQGVDRSNIDAVIDSNQTTTVTVTVEPCLPDHQTRVCSCHDDDPELLFGSKANKLCDDKDGDGGVSSSPSCCSICLMDYKESDILRVLTECGHFFHVNCVNPWITLHLTCPICRSLVKNF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0508 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 156 IPR013083 -
Lele39g0508 158 SMART ring_2 110 151 IPR001841 -
Lele39g0508 158 SUPERFAMILY RING/U-box 109 156 - -
Lele39g0508 158 Pfam Ring finger domain 110 152 IPR001841 -
Lele39g0508 158 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Lele39g0508 158 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 154 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0508 Lele-ChrLele39 4209219 4209695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0508 1 153 C3H Transcription Factor Family AT5G06490 30.857 9.98e-20 79.7