Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0480 ATGTGCTATTTTTCTGTTCATTTAATTTGTGATGGTCAGTTGTCGAATTCACAGGATATTTCGAGTATGCGTGGGATTTCGGTAAGAGAAGTCCATCAGTTGTCAAAAGCACAGGATAGACCAATCACACGGCTGGCCTCCATCAGAGAAGTGGCTCAGCTATCAAATGCTAGGCTAGTTTTGATTAGAGATGATATAGGATTTGATGGTCAAGGCTCTCATGAACCTGTTCACTTTGCCCCTGCAAGAACATGGAAAGGAAAAGCATCTTTACCAGAATCAGAAGATATTATATCTGATGTTGAGGCATTAAAGGGAAGCTTTGATTTATTTGAGGAAGGCCCAAGCTCATTTGCGGGTGCTAGTCACCCACCTGAACCTGTTGATACGGATCTCATGAGAACAGTTTATGTACCAATAGGTCAAAACAAATCCGAGGCTGGAGGCTTAACGAAGAGCTTTTCTGTGAAGGGTTCTTCCCTAGAAGATCTCTCAATTCGTTTTCCACCTAAAAAACCTAGTCCAGCTGTACTTTCCCCTGCAGAAAGTCTAGTTGAAGAACAAAGTGATTTGGGGAACTTGCCCTCTCCTGTTTTGGGTCCTCGTACATCACAGAATACTGATCGCTCTGTCCTTCCTCAAGATTCTGATGAGAAAGAATGCGTTTGGGATGCATCTTTGCCTCCTAGCGGAAATGTCAGTCCACTTAGTAGTATCGATAGTACTGGTGTTGTAACAGCAATGAGCATTGCTAATAGTTGTGCAAGTACATACCGGAGTGATGCACTCACTAGCGATGGCATGCTTAGTTTAGATAGGAACTTTGATAGTACTAAGGGGAGTGTGCGGGGTGATTCTCTAGAGAGTACAAAAACCAGTGCTAGTCAAGCAAGTGACAGCAGTGGGTTCAGTGATGACAGCAACTGGAGCAATGTTACTGGTAGTGCCAATAAGCCTCACAAAGGAAATGATCCTCGGTGGAAGGCTATCCTTGCCATCCGAGCTCGGGATGGGATTTTGGGCATGAGTCATTTCAAGCTTCTCAAAAGACTTGGTTGTGGTGATATTGGAAGTGTATATCTCTCAGAGTTGAGCGCAACTCGGTGTTATTTTGCGATGAAAGTTATGGACAAGGCATCCCTAGCAGCCAGAAAGAAGCTGACTAGGGCACAAACTGAAAGGGAGATATTGCAGCTGCTTGACCATCCATTTCTGCCAACTTTGTATACTCATTTTGAGACAGACAGATTTTCCTGTCTTGTGATGGAATACTGTCCTGGAGGTGACCTACACACCTTAAGGCAACGTCAACCCGGGAAACATTTCTCAGAGTATGCTGCTCGTTTTTATGCCGCGGAGGTCCTTTTAGCACTTGAATATCTGCACATGCTTGGAGTAGTGTATCGAGACCTTAAACCTGAGAACGTACTGGTCCGAGATGATGGTCATATTATGCTTTCGGACTTTGATCTCTCCCTTAGATGTGCTGTTTCACCAACACTGATTAGAACATGTGATGGTGACCCTAAACGAGGCGGTAGTGCATTTTGTGTTCAGCCTGCTTGTACTGAGCCTTCATCATCATGCATCCAACCTGCTTGTTTCATCCCTCGGCTCTTCCCTCAGAAAAACAAGAAATCACAGAAGCCTAAAGCTGAGCCAGGGTTATCAGTCAACATGCTTCCTGAGCTTGTGGCTGAGCCCACTTCGGCTCGGTCCATGTCCTTTGTTGGAACCCATGAATACCTCGCGCCAGAAATCATCAAAGGAGAAGGTCATGGCAGTGCAGTGGATTGGTGGACATTTGGAATTTTCCTGCACGAGCTCTTATACGGTAAAACGCCTTTCAAAGGTTCAGGGAATCGTGCTACACTATTCAATGTGGTTGGCCAGCAGCTCAAATTTCCAGAGTCACCTGCCACTAGCTATGCTAGCCGGGATCTGATCCGAGGCTTGCTGGTGAAGGAACCACAGAACCGGCTCGGAGTAAAGAGAGGCGCAACTGAGATCAAGCAGCATCCCTTCTTTGAGGGTGTGAATTGGGCTTTGATTAGGTGCAGCACTCCCCCAGAAGTGCCCAGACCGATTGAGAGCGAGATTCCTGGGGCCGTAAGATTTGGACCACCGGATCCAATTGGTAACAATAGTAAGAGGATGGTAGGTACTGACATGAAGTCTGGGGGTAAATATCTAGACTTTGAGTTCTTCTAG 2211 0.4591 MCYFSVHLICDGQLSNSQDISSMRGISVREVHQLSKAQDRPITRLASIREVAQLSNARLVLIRDDIGFDGQGSHEPVHFAPARTWKGKASLPESEDIISDVEALKGSFDLFEEGPSSFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGGLTKSFSVKGSSLEDLSIRFPPKKPSPAVLSPAESLVEEQSDLGNLPSPVLGPRTSQNTDRSVLPQDSDEKECVWDASLPPSGNVSPLSSIDSTGVVTAMSIANSCASTYRSDALTSDGMLSLDRNFDSTKGSVRGDSLESTKTSASQASDSSGFSDDSNWSNVTGSANKPHKGNDPRWKAILAIRARDGILGMSHFKLLKRLGCGDIGSVYLSELSATRCYFAMKVMDKASLAARKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTCDGDPKRGGSAFCVQPACTEPSSSCIQPACFIPRLFPQKNKKSQKPKAEPGLSVNMLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQNRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPIESEIPGAVRFGPPDPIGNNSKRMVGTDMKSGGKYLDFEFF 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0480 736 Gene3D Transferase(Phosphotransferase) domain 1 429 498 - -
Lele39g0480 736 FunFam serine/threonine-protein kinase D6PK-like 429 496 - -
Lele39g0480 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Lele39g0480 736 MobiDBLite consensus disorder prediction 278 318 - -
Lele39g0480 736 ProSiteProfiles Protein kinase domain profile. 345 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0480 736 PANTHER FLIPPASE KINASE 1-RELATED 121 697 - -
Lele39g0480 736 CDD STKc_phototropin_like 343 695 - -
Lele39g0480 736 MobiDBLite consensus disorder prediction 166 237 - -
Lele39g0480 736 SUPERFAMILY Protein kinase-like (PK-like) 327 700 IPR011009 -
Lele39g0480 736 Gene3D Transferase(Phosphotransferase) domain 1 571 693 - -
Lele39g0480 736 Pfam Protein kinase domain 346 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0480 736 Pfam Protein kinase domain 573 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0480 736 SMART serkin_6 345 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0480 736 MobiDBLite consensus disorder prediction 278 322 - -
Lele39g0480 736 MobiDBLite consensus disorder prediction 699 720 - -
Lele39g0480 736 Gene3D Phosphorylase Kinase; domain 1 343 428 - -
Lele39g0480 736 FunFam Serine/threonine-protein kinase D6PK-like 343 428 - -
Lele39g0480 736 FunFam serine/threonine-protein kinase D6PK-like 571 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0480 Lele-ChrLele39 3840047 3843150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0480 41 736 AGC Kinase Gene Family AT2G44830 69.613 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lele39g0480 Pkinase 1.3e-36 CL0016